Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33810

Experiment: m.b. Cholin acetate 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Cholin acetate 15 mM
3,543,670	-		PGA1_c33790	0.76	+0.5
3,543,675	-		PGA1_c33790	0.77	-0.4
3,543,675	-		PGA1_c33790	0.77	-0.6
3,543,684	+		PGA1_c33790	0.78	+0.1
3,543,704	+		PGA1_c33790	0.80	+0.4
3,543,712	+		PGA1_c33790	0.81	+0.1
3,543,725	-		PGA1_c33790	0.83	+0.7
3,543,730	+		PGA1_c33790	0.83	+0.2
3,543,768	-		PGA1_c33790	0.88	-0.2
3,543,772	+		PGA1_c33790	0.89	-1.6
3,543,820	+				-0.1
3,543,828	+				+0.1
3,543,860	+				+0.0
3,543,901	+				-1.1
3,543,905	+				-0.3
3,543,947	+				+1.0
3,543,958	+				-0.7
3,543,958	+				-0.2
3,543,958	+				+0.8
3,543,966	-				-0.1
3,543,966	-				+0.2
3,543,966	-				+0.4
3,543,966	-				+0.5
3,543,966	-				-0.6
3,543,966	-				-1.0
3,543,966	-				-0.8
3,543,968	+				-0.4
3,543,974	-				+0.6
3,543,985	-				-1.6
3,544,014	+				+1.1
3,544,015	+				-1.4
3,544,031	-		PGA1_c33800	0.11	+0.3
3,544,048	-		PGA1_c33800	0.14	+0.6
3,544,077	+		PGA1_c33800	0.18	-1.6
3,544,082	+		PGA1_c33800	0.18	+0.1
3,544,090	+		PGA1_c33800	0.19	-0.2
3,544,090	+		PGA1_c33800	0.19	-0.5
3,544,090	+		PGA1_c33800	0.19	-1.3
3,544,090	+		PGA1_c33800	0.19	+0.3
3,544,090	+		PGA1_c33800	0.19	+1.8
3,544,090	+		PGA1_c33800	0.19	-0.6
3,544,090	+		PGA1_c33800	0.19	-0.3
3,544,090	+		PGA1_c33800	0.19	+0.1
3,544,090	-		PGA1_c33800	0.19	-0.9
3,544,090	-		PGA1_c33800	0.19	-0.4
3,544,098	-		PGA1_c33800	0.20	-0.7
3,544,107	+		PGA1_c33800	0.22	-0.5
3,544,139	+		PGA1_c33800	0.26	+0.1
3,544,139	+		PGA1_c33800	0.26	-0.3
3,544,170	+		PGA1_c33800	0.30	+0.1
3,544,178	-		PGA1_c33800	0.32	-0.4
3,544,200	+		PGA1_c33800	0.35	-2.2
3,544,241	+		PGA1_c33800	0.40	-0.6
3,544,249	-		PGA1_c33800	0.41	-1.3
3,544,249	-		PGA1_c33800	0.41	+1.7
3,544,249	-		PGA1_c33800	0.41	+1.0
3,544,252	-		PGA1_c33800	0.42	-2.0
3,544,273	-		PGA1_c33800	0.45	-1.1
3,544,273	-		PGA1_c33800	0.45	+0.7
3,544,273	-		PGA1_c33800	0.45	+0.3
3,544,278	-		PGA1_c33800	0.45	+0.1
3,544,278	-		PGA1_c33800	0.45	+0.1
3,544,285	+		PGA1_c33800	0.46	+0.1
3,544,294	+		PGA1_c33800	0.48	+0.9
3,544,312	-		PGA1_c33800	0.50	+0.8
3,544,337	+		PGA1_c33800	0.54	+0.2
3,544,392	+		PGA1_c33800	0.61	-0.9
3,544,441	-		PGA1_c33800	0.68	-0.4
3,544,444	+		PGA1_c33800	0.68	+0.8
3,544,458	+		PGA1_c33800	0.70	+0.4
3,544,459	-		PGA1_c33800	0.70	-0.0
3,544,468	+		PGA1_c33800	0.72	+0.3
3,544,502	+		PGA1_c33800	0.76	-0.7
3,544,510	-		PGA1_c33800	0.77	+0.5
3,544,525	+		PGA1_c33800	0.80	-0.2
3,544,525	+		PGA1_c33800	0.80	+0.6
3,544,533	-		PGA1_c33800	0.81	-0.3
3,544,533	-		PGA1_c33800	0.81	-0.5
3,544,556	-		PGA1_c33800	0.84	-1.4
3,544,632	+				+0.7
3,544,637	+				+0.0
3,544,637	+				+0.9
3,544,644	-				+0.7
3,544,673	+				-1.7
3,544,681	-				+0.4
3,544,696	+				+0.3
3,544,696	+				+0.7
3,544,732	-				-0.5
3,544,763	-				+0.1
3,544,770	+				-0.4
3,544,770	+				+1.4
3,544,775	+				-0.0
3,544,775	+				+1.2
3,544,783	-				+0.2
3,544,793	-				+0.1
3,544,814	-		PGA1_c33810	0.10	+1.3
3,544,846	+		PGA1_c33810	0.13	+0.8
3,544,853	+		PGA1_c33810	0.13	-0.1
3,544,853	+		PGA1_c33810	0.13	+0.5
3,544,853	+		PGA1_c33810	0.13	-0.3
3,544,861	-		PGA1_c33810	0.14	+0.5
3,544,861	-		PGA1_c33810	0.14	-2.2
3,544,861	-		PGA1_c33810	0.14	+0.1
3,544,866	-		PGA1_c33810	0.14	-0.5
3,544,874	+		PGA1_c33810	0.15	+0.4
3,544,899	+		PGA1_c33810	0.16	+0.7
3,544,923	-		PGA1_c33810	0.18	+0.3
3,544,929	-		PGA1_c33810	0.18	+0.1
3,544,943	+		PGA1_c33810	0.19	-0.0
3,544,943	+		PGA1_c33810	0.19	-0.2
3,544,943	+		PGA1_c33810	0.19	+0.8
3,544,943	+		PGA1_c33810	0.19	+1.1
3,544,948	+		PGA1_c33810	0.20	-0.6
3,544,958	+		PGA1_c33810	0.21	+0.8
3,544,958	+		PGA1_c33810	0.21	+0.5
3,544,958	+		PGA1_c33810	0.21	+0.5
3,544,958	+		PGA1_c33810	0.21	-1.2
3,544,958	+		PGA1_c33810	0.21	-0.7
3,544,958	+		PGA1_c33810	0.21	-1.7
3,544,958	+		PGA1_c33810	0.21	-0.2
3,544,958	+		PGA1_c33810	0.21	+0.4
3,544,958	+		PGA1_c33810	0.21	-0.1
3,544,958	+		PGA1_c33810	0.21	-0.3
3,544,958	+		PGA1_c33810	0.21	-0.1
3,544,958	+		PGA1_c33810	0.21	-1.7
3,544,958	+		PGA1_c33810	0.21	+0.2
3,544,958	+		PGA1_c33810	0.21	+0.7
3,544,958	+		PGA1_c33810	0.21	+0.1
3,544,958	+		PGA1_c33810	0.21	+1.2
3,544,958	+		PGA1_c33810	0.21	-0.4
3,544,958	+		PGA1_c33810	0.21	+0.1
3,544,958	+		PGA1_c33810	0.21	+0.2
3,544,958	+		PGA1_c33810	0.21	+1.3
3,544,958	+		PGA1_c33810	0.21	-2.7
3,544,958	+		PGA1_c33810	0.21	-1.3
3,544,966	-		PGA1_c33810	0.21	+1.7
3,544,966	-		PGA1_c33810	0.21	-0.0
3,544,966	-		PGA1_c33810	0.21	-0.4
3,544,966	-		PGA1_c33810	0.21	+0.7
3,544,966	-		PGA1_c33810	0.21	-1.2
3,544,966	-		PGA1_c33810	0.21	-0.3
3,544,966	-		PGA1_c33810	0.21	-0.3
3,544,966	-		PGA1_c33810	0.21	+0.6
3,544,966	-		PGA1_c33810	0.21	+0.4
3,544,966	-		PGA1_c33810	0.21	+0.2
3,544,966	-		PGA1_c33810	0.21	+1.0
3,544,966	-		PGA1_c33810	0.21	-1.0
3,544,966	-		PGA1_c33810	0.21	-0.8
3,544,966	-		PGA1_c33810	0.21	-0.1
3,544,966	-		PGA1_c33810	0.21	-0.0
3,544,966	-		PGA1_c33810	0.21	-0.2
3,544,966	-		PGA1_c33810	0.21	+0.7
3,544,966	-		PGA1_c33810	0.21	-0.4
3,544,966	-		PGA1_c33810	0.21	-0.2
3,544,966	-		PGA1_c33810	0.21	-0.2
3,544,966	-		PGA1_c33810	0.21	+0.2
3,544,966	-		PGA1_c33810	0.21	-0.3
3,544,966	-		PGA1_c33810	0.21	+1.1
3,544,966	-		PGA1_c33810	0.21	-0.4
3,544,966	-		PGA1_c33810	0.21	-1.0
3,544,977	+		PGA1_c33810	0.22	+0.4
3,544,977	+		PGA1_c33810	0.22	+0.3
3,544,985	-		PGA1_c33810	0.22	+0.3
3,544,985	-		PGA1_c33810	0.22	+0.8
3,545,024	-		PGA1_c33810	0.25	+0.9
3,545,046	-		PGA1_c33810	0.27	-0.3
3,545,051	+		PGA1_c33810	0.27	+0.6
3,545,064	-		PGA1_c33810	0.28	+0.5
3,545,098	+		PGA1_c33810	0.30	+1.0
3,545,106	-		PGA1_c33810	0.31	-0.0
3,545,131	+		PGA1_c33810	0.33	-0.2
3,545,175	-		PGA1_c33810	0.36	-1.1
3,545,177	+		PGA1_c33810	0.36	+0.1
3,545,217	+		PGA1_c33810	0.39	-0.9
3,545,217	+		PGA1_c33810	0.39	+1.1
3,545,233	+		PGA1_c33810	0.40	+0.1
3,545,235	+		PGA1_c33810	0.40	+0.8
3,545,243	-		PGA1_c33810	0.41	-0.1
3,545,267	-		PGA1_c33810	0.43	+0.1
3,545,267	-		PGA1_c33810	0.43	-0.1
3,545,267	-		PGA1_c33810	0.43	-0.3
3,545,274	+		PGA1_c33810	0.43	-0.7
3,545,310	-		PGA1_c33810	0.46	-0.4
3,545,321	-		PGA1_c33810	0.46	+0.5
3,545,327	+		PGA1_c33810	0.47	+1.0
3,545,331	-		PGA1_c33810	0.47	+1.2
3,545,336	-		PGA1_c33810	0.47	-1.8
3,545,368	-		PGA1_c33810	0.50	+1.1
3,545,381	+		PGA1_c33810	0.51	+0.4
3,545,401	-		PGA1_c33810	0.52	-1.1
3,545,401	-		PGA1_c33810	0.52	-0.4
3,545,419	-		PGA1_c33810	0.53	+0.2
3,545,439	-		PGA1_c33810	0.55	+0.4
3,545,466	+		PGA1_c33810	0.57	+0.6
3,545,470	-		PGA1_c33810	0.57	+0.6
3,545,470	-		PGA1_c33810	0.57	+0.7
3,545,474	-		PGA1_c33810	0.57	+0.3
3,545,482	+		PGA1_c33810	0.58	+0.3
3,545,493	-		PGA1_c33810	0.59	-0.2
3,545,614	+		PGA1_c33810	0.67	+0.0
3,545,619	-		PGA1_c33810	0.68	+0.1
3,545,629	+		PGA1_c33810	0.68	+0.8
3,545,630	-		PGA1_c33810	0.68	-1.0
3,545,675	-		PGA1_c33810	0.71	+1.0
3,545,680	-		PGA1_c33810	0.72	-0.7
3,545,688	+		PGA1_c33810	0.72	-1.3
3,545,691	-		PGA1_c33810	0.73	-1.6
3,545,699	-		PGA1_c33810	0.73	+0.5
3,545,702	+		PGA1_c33810	0.73	-0.0
3,545,710	-		PGA1_c33810	0.74	+0.5
3,545,792	+		PGA1_c33810	0.80	+0.1
3,545,821	-		PGA1_c33810	0.82	+0.3
3,545,909	-		PGA1_c33810	0.88	-0.1
3,546,003	+				+0.8
3,546,003	+				-1.4
3,546,003	+				+0.0
3,546,011	-				-1.4
3,546,011	-				+0.1
3,546,011	-				+0.3
3,546,011	-				-0.5
3,546,011	-				+0.4
3,546,011	-				+0.1
3,546,011	-				-0.4
3,546,011	-				-0.8
3,546,034	-				-3.6
3,546,061	+				-0.6
3,546,064	-				-0.6
3,546,083	+				-2.0
3,546,113	+				-0.4
3,546,137	-				+0.0
3,546,144	+				-2.2
3,546,144	+				+0.3
3,546,144	+				+0.6
3,546,144	+				+0.5
3,546,144	+				-0.3
3,546,144	+				-0.1
3,546,144	+				-0.3
3,546,144	+				-0.5
3,546,144	+				-0.7
3,546,144	+				+0.9
3,546,144	+				+0.2
3,546,144	+				+0.6
3,546,144	+				+1.5
3,546,144	+				-0.7
3,546,147	-				+0.9
3,546,147	-				+0.4
3,546,147	-				+1.2
3,546,149	+				+0.2
3,546,151	+				+0.4
3,546,152	-				+1.6
3,546,152	-				-1.3
3,546,152	-				+0.8
3,546,152	-				+1.6
3,546,152	-				-0.1
3,546,152	-				-2.2
3,546,152	-				+0.1
3,546,152	-				-1.5
3,546,152	-				-0.2
3,546,152	-				-0.1
3,546,152	-				-0.8
3,546,152	-				-0.3
3,546,152	-				-1.5
3,546,152	-				+0.3
3,546,159	-				-0.8
3,546,165	+				+0.5
3,546,165	+				+0.4
3,546,214	+				+1.0
3,546,214	-				-0.1
3,546,222	-				+0.5
3,546,222	-				+0.9
3,546,238	+				+0.5
3,546,238	+				+0.6
3,546,238	+				-0.3
3,546,246	-				+1.3
3,546,246	-				+0.8
3,546,246	-				-2.1
3,546,246	-				-0.1
3,546,246	-				-1.7
3,546,246	-				+0.2
3,546,248	+				+0.6
3,546,277	+				-1.4
3,546,306	-		PGA1_c33820	0.11	-1.4
3,546,317	+		PGA1_c33820	0.12	+0.9
3,546,349	+		PGA1_c33820	0.14	-0.0
3,546,349	+		PGA1_c33820	0.14	+1.6
3,546,349	+		PGA1_c33820	0.14	-0.2
3,546,349	+		PGA1_c33820	0.14	+1.1
3,546,357	-		PGA1_c33820	0.14	-1.0
3,546,357	-		PGA1_c33820	0.14	-0.2
3,546,357	-		PGA1_c33820	0.14	+0.9
3,546,405	+		PGA1_c33820	0.17	-0.4
3,546,428	-		PGA1_c33820	0.19	-0.3
3,546,429	+		PGA1_c33820	0.19	-0.4
3,546,432	+		PGA1_c33820	0.19	+0.6
3,546,448	+		PGA1_c33820	0.20	-1.1
3,546,464	-		PGA1_c33820	0.21	-0.1
3,546,479	-		PGA1_c33820	0.22	+1.6
3,546,495	-		PGA1_c33820	0.23	+0.4
3,546,541	+		PGA1_c33820	0.25	-0.5
3,546,541	+		PGA1_c33820	0.25	+0.1
3,546,541	+		PGA1_c33820	0.25	-0.3
3,546,549	-		PGA1_c33820	0.26	+0.8
3,546,560	-		PGA1_c33820	0.27	-2.9
3,546,574	+		PGA1_c33820	0.27	+0.2
3,546,575	+		PGA1_c33820	0.28	-0.5
3,546,575	+		PGA1_c33820	0.28	-0.1
3,546,583	-		PGA1_c33820	0.28	-0.1
3,546,583	-		PGA1_c33820	0.28	+0.2
3,546,583	-		PGA1_c33820	0.28	-0.6
3,546,587	+		PGA1_c33820	0.28	+0.2
3,546,587	+		PGA1_c33820	0.28	+0.3
3,546,595	-		PGA1_c33820	0.29	+0.4
3,546,628	+		PGA1_c33820	0.31	+0.2
3,546,632	-		PGA1_c33820	0.31	-1.6
3,546,636	-		PGA1_c33820	0.31	+1.0
3,546,638	-		PGA1_c33820	0.31	-0.0
3,546,641	+		PGA1_c33820	0.32	+1.8
3,546,641	+		PGA1_c33820	0.32	+0.3
3,546,646	-		PGA1_c33820	0.32	-0.2
3,546,646	-		PGA1_c33820	0.32	-0.0
3,546,646	-		PGA1_c33820	0.32	-0.9
3,546,658	+		PGA1_c33820	0.33	+1.5
3,546,658	+		PGA1_c33820	0.33	-1.3
3,546,665	+		PGA1_c33820	0.33	-0.1
3,546,706	+		PGA1_c33820	0.36	-1.1
3,546,714	-		PGA1_c33820	0.36	-1.3
3,546,716	+		PGA1_c33820	0.36	-0.3
3,546,719	-		PGA1_c33820	0.36	-0.3
3,546,724	-		PGA1_c33820	0.37	+0.4
3,546,728	+		PGA1_c33820	0.37	-0.4
3,546,796	+		PGA1_c33820	0.41	-0.6
3,546,796	+		PGA1_c33820	0.41	+0.2
3,546,796	+		PGA1_c33820	0.41	+0.5
3,546,796	+		PGA1_c33820	0.41	-0.2
3,546,796	+		PGA1_c33820	0.41	+1.1
3,546,803	-		PGA1_c33820	0.41	+0.2
3,546,804	-		PGA1_c33820	0.41	+0.1
3,546,806	+		PGA1_c33820	0.42	-0.3
3,546,812	+		PGA1_c33820	0.42	+0.0
3,546,812	+		PGA1_c33820	0.42	+0.1
3,546,827	-		PGA1_c33820	0.43	-0.8
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