Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31930

Experiment: m.b. Cholin acetate 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Cholin acetate 15 mM
3,346,570	+		PGA1_c31910	0.41	-0.2
3,346,593	+		PGA1_c31910	0.49	-1.4
3,346,598	+		PGA1_c31910	0.51	+1.7
3,346,598	+		PGA1_c31910	0.51	-0.0
3,346,601	-		PGA1_c31910	0.52	+0.6
3,346,603	+		PGA1_c31910	0.52	+1.0
3,346,603	+		PGA1_c31910	0.52	+0.1
3,346,603	+		PGA1_c31910	0.52	+0.2
3,346,603	+		PGA1_c31910	0.52	-1.1
3,346,603	+		PGA1_c31910	0.52	-0.1
3,346,603	+		PGA1_c31910	0.52	+1.1
3,346,603	+		PGA1_c31910	0.52	-1.1
3,346,603	+		PGA1_c31910	0.52	-0.7
3,346,603	+		PGA1_c31910	0.52	-0.6
3,346,603	+		PGA1_c31910	0.52	+0.8
3,346,603	+		PGA1_c31910	0.52	+0.6
3,346,603	+		PGA1_c31910	0.52	+0.3
3,346,603	+		PGA1_c31910	0.52	-0.7
3,346,603	+		PGA1_c31910	0.52	-1.4
3,346,606	-		PGA1_c31910	0.53	-1.4
3,346,611	-		PGA1_c31910	0.55	-0.8
3,346,611	-		PGA1_c31910	0.55	-0.0
3,346,611	-		PGA1_c31910	0.55	-0.3
3,346,611	-		PGA1_c31910	0.55	-0.0
3,346,611	-		PGA1_c31910	0.55	+0.1
3,346,611	-		PGA1_c31910	0.55	-0.8
3,346,611	-		PGA1_c31910	0.55	+0.4
3,346,728	-				-1.3
3,346,773	-				+0.3
3,346,803	+				-0.8
3,346,823	-				-0.5
3,346,853	+				+0.3
3,346,853	+				-2.2
3,346,853	+				+0.9
3,346,855	+				-0.5
3,346,861	-				-0.3
3,346,861	-				+0.3
3,346,863	-				-0.5
3,346,893	+				+0.7
3,346,994	-		PGA1_c31920	0.21	-1.4
3,346,996	+		PGA1_c31920	0.21	-1.0
3,347,004	-		PGA1_c31920	0.22	+0.6
3,347,004	-		PGA1_c31920	0.22	+0.4
3,347,029	+		PGA1_c31920	0.27	-0.3
3,347,042	-		PGA1_c31920	0.29	-1.3
3,347,075	-		PGA1_c31920	0.34	-0.1
3,347,095	+		PGA1_c31920	0.38	+1.4
3,347,103	-		PGA1_c31920	0.39	-1.3
3,347,114	+		PGA1_c31920	0.41	-1.7
3,347,166	-		PGA1_c31920	0.50	-0.5
3,347,176	-		PGA1_c31920	0.52	+0.5
3,347,178	+		PGA1_c31920	0.52	-0.6
3,347,201	+		PGA1_c31920	0.56	-0.5
3,347,363	-		PGA1_c31920	0.83	-1.1
3,347,460	+				-0.9
3,347,460	+				+0.8
3,347,463	-				+0.3
3,347,480	+				+0.3
3,347,518	-				-0.8
3,347,569	-				+0.4
3,347,610	+				-0.4
3,347,610	-				+0.2
3,347,669	+				-0.1
3,347,678	-		PGA1_c31930	0.10	+0.5
3,347,679	-		PGA1_c31930	0.11	+0.5
3,347,685	+		PGA1_c31930	0.11	+0.6
3,347,705	+		PGA1_c31930	0.12	-0.5
3,347,705	+		PGA1_c31930	0.12	+0.2
3,347,705	+		PGA1_c31930	0.12	+0.5
3,347,705	+		PGA1_c31930	0.12	-0.1
3,347,705	+		PGA1_c31930	0.12	+0.6
3,347,713	-		PGA1_c31930	0.13	+0.7
3,347,713	-		PGA1_c31930	0.13	+1.4
3,347,727	+		PGA1_c31930	0.14	-0.6
3,347,727	-		PGA1_c31930	0.14	-0.8
3,347,737	+		PGA1_c31930	0.15	+1.0
3,347,750	-		PGA1_c31930	0.16	+0.2
3,347,878	+		PGA1_c31930	0.25	-0.5
3,347,886	-		PGA1_c31930	0.26	+0.5
3,347,890	+		PGA1_c31930	0.26	-0.1
3,347,891	-		PGA1_c31930	0.26	+0.4
3,347,971	-		PGA1_c31930	0.32	+0.1
3,348,075	-		PGA1_c31930	0.40	+0.7
3,348,085	+		PGA1_c31930	0.40	+0.4
3,348,124	+		PGA1_c31930	0.43	-0.4
3,348,143	+		PGA1_c31930	0.45	+1.3
3,348,145	+		PGA1_c31930	0.45	+1.6
3,348,153	-		PGA1_c31930	0.45	+0.8
3,348,156	+				+1.2
3,348,230	-		PGA1_c31930	0.51	-0.0
3,348,251	-		PGA1_c31930	0.52	-1.1
3,348,265	+		PGA1_c31930	0.53	+0.4
3,348,267	+		PGA1_c31930	0.54	+1.2
3,348,275	-		PGA1_c31930	0.54	+0.8
3,348,332	+		PGA1_c31930	0.58	-0.9
3,348,335	+		PGA1_c31930	0.59	-0.4
3,348,338	-		PGA1_c31930	0.59	+0.1
3,348,340	+		PGA1_c31930	0.59	-0.9
3,348,390	+		PGA1_c31930	0.63	+0.1
3,348,390	+		PGA1_c31930	0.63	+0.7
3,348,390	+		PGA1_c31930	0.63	-0.2
3,348,398	-		PGA1_c31930	0.63	+0.9
3,348,398	-		PGA1_c31930	0.63	-1.0
3,348,398	-		PGA1_c31930	0.63	+1.0
3,348,403	-		PGA1_c31930	0.64	-0.2
3,348,463	-		PGA1_c31930	0.68	+1.1
3,348,463	-		PGA1_c31930	0.68	+0.2
3,348,471	-		PGA1_c31930	0.69	-0.4
3,348,519	+		PGA1_c31930	0.72	-0.1
3,348,557	-		PGA1_c31930	0.75	-0.3
3,348,580	-		PGA1_c31930	0.77	+1.2
3,348,605	-		PGA1_c31930	0.78	-0.3
3,348,606	-		PGA1_c31930	0.78	+0.2
3,348,606	-		PGA1_c31930	0.78	-0.1
3,348,608	+		PGA1_c31930	0.79	-1.1
3,348,639	-		PGA1_c31930	0.81	-0.4
3,348,644	-		PGA1_c31930	0.81	+0.8
3,348,644	-		PGA1_c31930	0.81	-1.4
3,348,682	+		PGA1_c31930	0.84	+2.2
3,348,682	+		PGA1_c31930	0.84	+0.0
3,348,682	+		PGA1_c31930	0.84	+0.4
3,348,682	+		PGA1_c31930	0.84	-0.3
3,348,682	+		PGA1_c31930	0.84	+1.0
3,348,682	+		PGA1_c31930	0.84	-0.2
3,348,690	-		PGA1_c31930	0.85	+1.2
3,348,690	-		PGA1_c31930	0.85	+0.6
3,348,690	-		PGA1_c31930	0.85	+0.8
3,348,692	+		PGA1_c31930	0.85	+0.6
3,348,723	-		PGA1_c31930	0.87	+0.3
3,348,731	+		PGA1_c31930	0.88	+0.3
3,348,732	-		PGA1_c31930	0.88	-1.9
3,348,741	+		PGA1_c31930	0.88	+0.7
3,348,749	-		PGA1_c31930	0.89	+0.5
3,348,765	-				+1.1
3,348,800	+				+1.3
3,348,808	+				+0.3
3,348,808	-				+0.6
3,348,869	-				+0.1
3,348,874	-				+0.7
3,348,874	-				-0.4
3,348,877	+				+1.1
3,348,880	-				+1.0
3,348,901	-				-1.1
3,348,910	+				-0.4
3,348,912	+				+0.2
3,348,931	+				-1.7
3,348,931	+				-0.7
3,348,939	-				-0.7
3,348,939	-				+0.5
3,348,939	-				+0.3
3,348,977	-				-0.2
3,349,001	+		PGA1_c31940	0.11	-0.4
3,349,078	-		PGA1_c31940	0.20	-2.0
3,349,117	+		PGA1_c31940	0.24	+0.3
3,349,125	-		PGA1_c31940	0.25	-1.8
3,349,125	-		PGA1_c31940	0.25	-0.2
3,349,135	-		PGA1_c31940	0.26	-0.4
3,349,164	-		PGA1_c31940	0.29	-0.5
3,349,177	+		PGA1_c31940	0.30	+0.6
3,349,202	+		PGA1_c31940	0.33	-0.2
3,349,202	+		PGA1_c31940	0.33	-1.7
3,349,202	+		PGA1_c31940	0.33	-0.4
3,349,202	+		PGA1_c31940	0.33	-1.0
3,349,202	+		PGA1_c31940	0.33	+0.3
3,349,202	+		PGA1_c31940	0.33	+0.8
3,349,210	-		PGA1_c31940	0.34	-0.5
3,349,360	+		PGA1_c31940	0.50	-0.4
3,349,368	-		PGA1_c31940	0.51	+1.2
3,349,405	+		PGA1_c31940	0.55	+0.6
3,349,405	+		PGA1_c31940	0.55	-0.7
3,349,428	-		PGA1_c31940	0.58	+0.8
3,349,444	+		PGA1_c31940	0.59	-0.1
3,349,452	-		PGA1_c31940	0.60	-0.3
3,349,515	+		PGA1_c31940	0.67	+0.1
3,349,525	-		PGA1_c31940	0.68	-0.7
3,349,583	-		PGA1_c31940	0.74	+0.6
3,349,585	+		PGA1_c31940	0.75	-1.2
3,349,633	-		PGA1_c31940	0.80	-0.1
3,349,653	-		PGA1_c31940	0.82	-0.2
3,349,668	+		PGA1_c31940	0.84	+0.3
3,349,698	-		PGA1_c31940	0.87	+0.6
3,349,732	+				+0.8
3,349,739	-				-0.6
3,349,740	-				+0.4
3,349,755	-				+1.7
3,349,755	-				+0.1
3,349,786	-				+0.4
3,349,838	+				+0.2
3,349,846	-				-2.4
3,349,846	-				+1.0
3,349,846	-				-0.0
3,349,846	-				+0.6
3,349,856	-				+1.1
3,349,877	-				-0.3
3,349,896	+		PGA1_c31950	0.11	-0.7
3,349,896	+		PGA1_c31950	0.11	-1.2