Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01350

Experiment: m.b. Cholin acetate 15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c01330 and PGA1_c01340 are separated by 116 nucleotidesPGA1_c01340 and PGA1_c01350 are separated by 193 nucleotidesPGA1_c01350 and PGA1_c01360 are separated by 301 nucleotidesPGA1_c01360 and PGA1_c01370 are separated by 243 nucleotides PGA1_c01330: PGA1_c01330 - Uncharacterized protein conserved in bacteria, at 125,671 to 126,417 _c01330 PGA1_c01340: PGA1_c01340 - tRNA-Trp, at 126,534 to 126,609 _c01340 PGA1_c01350: PGA1_c01350 - putative UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase, at 126,803 to 128,995 _c01350 PGA1_c01360: PGA1_c01360 - putative preprotein translocase, secE subunit, at 129,297 to 129,494 _c01360 PGA1_c01370: PGA1_c01370 - transcription antitermination protein NusG, at 129,738 to 130,271 _c01370 Position (kb) 126 127 128 129Strain fitness (log2 ratio) -2 -1 0 1at 125.808 kb on + strand, within PGA1_c01330at 125.816 kb on - strand, within PGA1_c01330at 125.821 kb on - strand, within PGA1_c01330at 125.968 kb on - strand, within PGA1_c01330at 125.968 kb on - strand, within PGA1_c01330at 125.968 kb on - strand, within PGA1_c01330at 126.039 kb on - strand, within PGA1_c01330at 126.375 kb on + strandat 126.375 kb on + strandat 126.375 kb on + strandat 126.383 kb on - strandat 126.383 kb on - strandat 126.383 kb on - strandat 126.383 kb on - strandat 126.451 kb on + strandat 126.632 kb on + strandat 126.766 kb on + strandat 126.818 kb on - strandat 126.833 kb on - strandat 126.835 kb on + strandat 126.838 kb on - strandat 126.843 kb on - strandat 126.843 kb on - strandat 126.843 kb on - strandat 126.915 kb on + strandat 126.958 kb on + strandat 126.975 kb on + strandat 126.975 kb on + strandat 126.975 kb on + strandat 126.990 kb on + strandat 126.998 kb on - strandat 127.005 kb on + strandat 127.005 kb on + strandat 127.063 kb on - strand, within PGA1_c01350at 127.071 kb on + strand, within PGA1_c01350at 127.071 kb on + strand, within PGA1_c01350at 127.076 kb on + strand, within PGA1_c01350at 127.076 kb on + strand, within PGA1_c01350at 127.079 kb on - strand, within PGA1_c01350at 127.079 kb on - strand, within PGA1_c01350at 127.084 kb on - strand, within PGA1_c01350at 127.084 kb on - strand, within PGA1_c01350at 127.084 kb on - strand, within PGA1_c01350at 127.192 kb on + strand, within PGA1_c01350at 127.264 kb on - strand, within PGA1_c01350at 127.280 kb on + strand, within PGA1_c01350at 127.281 kb on + strand, within PGA1_c01350at 127.281 kb on + strand, within PGA1_c01350at 127.289 kb on - strand, within PGA1_c01350at 127.289 kb on - strand, within PGA1_c01350at 127.289 kb on - strand, within PGA1_c01350at 127.289 kb on - strand, within PGA1_c01350at 127.315 kb on - strand, within PGA1_c01350at 127.326 kb on + strand, within PGA1_c01350at 127.440 kb on + strand, within PGA1_c01350at 127.440 kb on + strand, within PGA1_c01350at 127.446 kb on - strand, within PGA1_c01350at 127.446 kb on - strand, within PGA1_c01350at 127.522 kb on - strand, within PGA1_c01350at 127.565 kb on - strand, within PGA1_c01350at 127.571 kb on + strand, within PGA1_c01350at 127.613 kb on + strand, within PGA1_c01350at 127.613 kb on + strand, within PGA1_c01350at 127.678 kb on - strand, within PGA1_c01350at 127.742 kb on + strand, within PGA1_c01350at 127.755 kb on - strand, within PGA1_c01350at 127.781 kb on - strand, within PGA1_c01350at 127.823 kb on + strand, within PGA1_c01350at 127.823 kb on + strand, within PGA1_c01350at 127.823 kb on + strand, within PGA1_c01350at 127.823 kb on + strand, within PGA1_c01350at 127.825 kb on + strand, within PGA1_c01350at 127.829 kb on - strand, within PGA1_c01350at 127.831 kb on - strand, within PGA1_c01350at 127.833 kb on - strand, within PGA1_c01350at 127.840 kb on + strand, within PGA1_c01350at 127.843 kb on - strand, within PGA1_c01350at 127.870 kb on + strand, within PGA1_c01350at 127.878 kb on - strand, within PGA1_c01350at 127.894 kb on - strand, within PGA1_c01350at 127.894 kb on - strand, within PGA1_c01350at 127.921 kb on + strand, within PGA1_c01350at 127.921 kb on + strand, within PGA1_c01350at 127.929 kb on - strand, within PGA1_c01350at 127.940 kb on - strand, within PGA1_c01350at 128.039 kb on - strand, within PGA1_c01350at 128.039 kb on - strand, within PGA1_c01350at 128.082 kb on + strand, within PGA1_c01350at 128.088 kb on + strand, within PGA1_c01350at 128.122 kb on + strand, within PGA1_c01350at 128.122 kb on + strand, within PGA1_c01350at 128.122 kb on + strand, within PGA1_c01350at 128.130 kb on - strand, within PGA1_c01350at 128.194 kb on + strand, within PGA1_c01350at 128.242 kb on + strand, within PGA1_c01350at 128.268 kb on - strand, within PGA1_c01350at 128.345 kb on + strand, within PGA1_c01350at 128.402 kb on + strand, within PGA1_c01350at 128.403 kb on + strand, within PGA1_c01350at 128.410 kb on - strand, within PGA1_c01350at 128.413 kb on + strand, within PGA1_c01350at 128.413 kb on + strand, within PGA1_c01350at 128.413 kb on + strand, within PGA1_c01350at 128.453 kb on + strand, within PGA1_c01350at 128.453 kb on + strand, within PGA1_c01350at 128.453 kb on + strand, within PGA1_c01350at 128.453 kb on + strand, within PGA1_c01350at 128.453 kb on + strand, within PGA1_c01350at 128.526 kb on + strand, within PGA1_c01350at 128.667 kb on + strand, within PGA1_c01350at 128.668 kb on - strand, within PGA1_c01350at 128.671 kb on + strand, within PGA1_c01350at 128.727 kb on + strand, within PGA1_c01350at 128.735 kb on - strand, within PGA1_c01350at 128.761 kb on + strand, within PGA1_c01350at 128.769 kb on - strand, within PGA1_c01350at 128.771 kb on + strand, within PGA1_c01350at 128.787 kb on + strandat 128.787 kb on + strandat 128.826 kb on - strandat 128.904 kb on + strandat 128.904 kb on + strandat 128.934 kb on - strandat 128.938 kb on + strandat 128.938 kb on + strandat 128.956 kb on - strandat 128.983 kb on + strandat 128.991 kb on - strandat 129.039 kb on + strandat 129.053 kb on + strandat 129.056 kb on - strandat 129.056 kb on - strandat 129.066 kb on - strandat 129.066 kb on - strandat 129.107 kb on + strandat 129.110 kb on - strandat 129.164 kb on - strandat 129.209 kb on - strandat 129.501 kb on - strandat 129.537 kb on + strandat 129.537 kb on + strandat 129.537 kb on + strandat 129.545 kb on - strandat 129.545 kb on - strandat 129.545 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM
remove
125,808 + PGA1_c01330 0.18 -0.1
125,816 - PGA1_c01330 0.19 -0.5
125,821 - PGA1_c01330 0.20 -0.7
125,968 - PGA1_c01330 0.40 -1.3
125,968 - PGA1_c01330 0.40 -0.4
125,968 - PGA1_c01330 0.40 +0.1
126,039 - PGA1_c01330 0.49 -2.3
126,375 + -0.8
126,375 + -0.6
126,375 + -0.0
126,383 - -0.6
126,383 - -1.2
126,383 - +0.9
126,383 - -0.7
126,451 + -0.5
126,632 + -0.1
126,766 + +1.1
126,818 - -0.2
126,833 - -0.5
126,835 + +0.0
126,838 - +0.1
126,843 - +0.5
126,843 - +0.8
126,843 - +1.1
126,915 + -1.9
126,958 + -1.3
126,975 + -0.3
126,975 + +1.6
126,975 + -0.3
126,990 + -0.1
126,998 - +0.2
127,005 + +0.0
127,005 + -0.2
127,063 - PGA1_c01350 0.12 -0.3
127,071 + PGA1_c01350 0.12 -1.6
127,071 + PGA1_c01350 0.12 +0.7
127,076 + PGA1_c01350 0.12 +0.1
127,076 + PGA1_c01350 0.12 +0.3
127,079 - PGA1_c01350 0.13 -0.1
127,079 - PGA1_c01350 0.13 +0.0
127,084 - PGA1_c01350 0.13 -2.1
127,084 - PGA1_c01350 0.13 -0.3
127,084 - PGA1_c01350 0.13 -0.1
127,192 + PGA1_c01350 0.18 -0.3
127,264 - PGA1_c01350 0.21 -0.7
127,280 + PGA1_c01350 0.22 -0.4
127,281 + PGA1_c01350 0.22 +0.3
127,281 + PGA1_c01350 0.22 -0.1
127,289 - PGA1_c01350 0.22 -1.9
127,289 - PGA1_c01350 0.22 -0.1
127,289 - PGA1_c01350 0.22 +0.0
127,289 - PGA1_c01350 0.22 -0.8
127,315 - PGA1_c01350 0.23 -0.5
127,326 + PGA1_c01350 0.24 -0.6
127,440 + PGA1_c01350 0.29 -0.6
127,440 + PGA1_c01350 0.29 -1.4
127,446 - PGA1_c01350 0.29 -0.4
127,446 - PGA1_c01350 0.29 +0.1
127,522 - PGA1_c01350 0.33 +0.2
127,565 - PGA1_c01350 0.35 +0.1
127,571 + PGA1_c01350 0.35 -1.1
127,613 + PGA1_c01350 0.37 -0.1
127,613 + PGA1_c01350 0.37 -0.5
127,678 - PGA1_c01350 0.40 -0.0
127,742 + PGA1_c01350 0.43 -0.3
127,755 - PGA1_c01350 0.43 +0.2
127,781 - PGA1_c01350 0.45 -0.1
127,823 + PGA1_c01350 0.47 -0.4
127,823 + PGA1_c01350 0.47 -0.4
127,823 + PGA1_c01350 0.47 +0.7
127,823 + PGA1_c01350 0.47 -0.5
127,825 + PGA1_c01350 0.47 -1.1
127,829 - PGA1_c01350 0.47 +1.2
127,831 - PGA1_c01350 0.47 +0.3
127,833 - PGA1_c01350 0.47 +0.3
127,840 + PGA1_c01350 0.47 -2.2
127,843 - PGA1_c01350 0.47 -0.3
127,870 + PGA1_c01350 0.49 -2.4
127,878 - PGA1_c01350 0.49 -0.5
127,894 - PGA1_c01350 0.50 -0.9
127,894 - PGA1_c01350 0.50 -0.2
127,921 + PGA1_c01350 0.51 -0.7
127,921 + PGA1_c01350 0.51 +0.9
127,929 - PGA1_c01350 0.51 -0.0
127,940 - PGA1_c01350 0.52 +0.2
128,039 - PGA1_c01350 0.56 +0.5
128,039 - PGA1_c01350 0.56 -1.1
128,082 + PGA1_c01350 0.58 -2.0
128,088 + PGA1_c01350 0.59 -1.1
128,122 + PGA1_c01350 0.60 -0.1
128,122 + PGA1_c01350 0.60 -0.3
128,122 + PGA1_c01350 0.60 -0.8
128,130 - PGA1_c01350 0.61 -0.4
128,194 + PGA1_c01350 0.63 -0.3
128,242 + PGA1_c01350 0.66 +0.1
128,268 - PGA1_c01350 0.67 +1.1
128,345 + PGA1_c01350 0.70 -1.0
128,402 + PGA1_c01350 0.73 -0.5
128,403 + PGA1_c01350 0.73 +0.5
128,410 - PGA1_c01350 0.73 -0.7
128,413 + PGA1_c01350 0.73 +0.1
128,413 + PGA1_c01350 0.73 -0.6
128,413 + PGA1_c01350 0.73 -0.7
128,453 + PGA1_c01350 0.75 +0.5
128,453 + PGA1_c01350 0.75 -0.2
128,453 + PGA1_c01350 0.75 +0.5
128,453 + PGA1_c01350 0.75 +1.0
128,453 + PGA1_c01350 0.75 -0.4
128,526 + PGA1_c01350 0.79 -1.2
128,667 + PGA1_c01350 0.85 -0.1
128,668 - PGA1_c01350 0.85 +1.1
128,671 + PGA1_c01350 0.85 -1.7
128,727 + PGA1_c01350 0.88 -0.2
128,735 - PGA1_c01350 0.88 +0.8
128,761 + PGA1_c01350 0.89 -0.7
128,769 - PGA1_c01350 0.90 -0.2
128,771 + PGA1_c01350 0.90 -0.6
128,787 + -0.9
128,787 + +1.1
128,826 - -1.2
128,904 + +1.0
128,904 + +0.6
128,934 - -0.8
128,938 + +1.3
128,938 + +0.1
128,956 - +0.3
128,983 + +0.7
128,991 - -0.2
129,039 + +0.4
129,053 + -0.3
129,056 - -0.7
129,056 - -0.1
129,066 - -0.6
129,066 - -2.2
129,107 + -0.5
129,110 - -1.3
129,164 - -1.1
129,209 - -0.8
129,501 - -1.0
129,537 + +0.7
129,537 + -0.3
129,537 + +1.5
129,545 - -0.5
129,545 - +0.2
129,545 - -0.7

Or see this region's nucleotide sequence