Experiment: Succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3663 and Rru_A3664 are separated by 125 nucleotides Rru_A3664 and Rru_A3665 are separated by 145 nucleotides Rru_A3665 and Rru_A3666 overlap by 10 nucleotides
Rru_A3663: Rru_A3663 - NAD-glutamate dehydrogenase (NCBI), at 4,204,911 to 4,209,788
_A3663
Rru_A3664: Rru_A3664 - ABC transporter component (NCBI), at 4,209,914 to 4,210,606
_A3664
Rru_A3665: Rru_A3665 - chemotaxis sensory transducer (NCBI), at 4,210,752 to 4,212,455
_A3665
Rru_A3666: Rru_A3666 - hypothetical protein (NCBI), at 4,212,446 to 4,213,675
_A3666
Position (kb) 4210
4211
4212
4213 Strain fitness (log2 ratio) -1
0
1 at 4209.826 kb on - strand at 4210.687 kb on + strand at 4210.716 kb on - strand at 4210.780 kb on + strand at 4210.780 kb on + strand at 4210.895 kb on + strand at 4210.895 kb on + strand at 4210.896 kb on - strand at 4211.081 kb on + strand, within Rru_A3665 at 4211.452 kb on + strand, within Rru_A3665 at 4211.453 kb on - strand, within Rru_A3665 at 4211.453 kb on - strand, within Rru_A3665 at 4212.492 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C) remove 4,209,826 - -0.9 4,210,687 + -0.4 4,210,716 - -0.0 4,210,780 + -0.4 4,210,780 + -0.6 4,210,895 + -0.3 4,210,895 + +0.4 4,210,896 - +0.1 4,211,081 + Rru_A3665 0.19 +0.2 4,211,452 + Rru_A3665 0.41 +0.0 4,211,453 - Rru_A3665 0.41 -0.2 4,211,453 - Rru_A3665 0.41 +0.6 4,212,492 - +0.1
Or see this region's nucleotide sequence