Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3517

Experiment: Succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3515 and Rru_A3516 are separated by 122 nucleotidesRru_A3516 and Rru_A3517 are separated by 16 nucleotidesRru_A3517 and Rru_A3518 are separated by 43 nucleotidesRru_A3518 and Rru_A3519 are separated by 32 nucleotides Rru_A3515: Rru_A3515 - Transcriptional Regulator, LytR/AlgR family (NCBI), at 4,048,032 to 4,048,742 _A3515 Rru_A3516: Rru_A3516 - hypothetical protein (NCBI), at 4,048,865 to 4,049,170 _A3516 Rru_A3517: Rru_A3517 - Major facilitator superfamily MFS_1 (NCBI), at 4,049,187 to 4,050,473 _A3517 Rru_A3518: Rru_A3518 - 2-dehydropantoate 2-reductase (NCBI), at 4,050,517 to 4,051,434 _A3518 Rru_A3519: Rru_A3519 - Transcriptional Regulator, MarR family (NCBI), at 4,051,467 to 4,051,958 _A3519 Position (kb) 4049 4050 4051Strain fitness (log2 ratio) -1 0 1 2at 4048.476 kb on + strand, within Rru_A3515at 4048.476 kb on + strand, within Rru_A3515at 4048.476 kb on + strand, within Rru_A3515at 4048.477 kb on - strand, within Rru_A3515at 4048.497 kb on + strand, within Rru_A3515at 4048.498 kb on - strand, within Rru_A3515at 4048.498 kb on - strand, within Rru_A3515at 4048.526 kb on + strand, within Rru_A3515at 4048.526 kb on + strand, within Rru_A3515at 4048.526 kb on + strand, within Rru_A3515at 4048.526 kb on + strand, within Rru_A3515at 4048.526 kb on + strand, within Rru_A3515at 4048.527 kb on - strand, within Rru_A3515at 4048.527 kb on - strand, within Rru_A3515at 4048.527 kb on - strand, within Rru_A3515at 4048.527 kb on - strand, within Rru_A3515at 4048.527 kb on - strand, within Rru_A3515at 4048.602 kb on + strand, within Rru_A3515at 4048.602 kb on + strand, within Rru_A3515at 4048.602 kb on + strand, within Rru_A3515at 4048.602 kb on + strand, within Rru_A3515at 4048.602 kb on + strand, within Rru_A3515at 4048.602 kb on + strand, within Rru_A3515at 4048.602 kb on + strand, within Rru_A3515at 4048.603 kb on - strand, within Rru_A3515at 4048.603 kb on - strand, within Rru_A3515at 4048.603 kb on - strand, within Rru_A3515at 4048.603 kb on - strand, within Rru_A3515at 4048.604 kb on + strand, within Rru_A3515at 4048.605 kb on - strand, within Rru_A3515at 4048.741 kb on - strandat 4048.862 kb on - strandat 4048.901 kb on + strand, within Rru_A3516at 4048.901 kb on + strand, within Rru_A3516at 4048.902 kb on - strand, within Rru_A3516at 4048.902 kb on - strand, within Rru_A3516at 4049.064 kb on + strand, within Rru_A3516at 4049.064 kb on + strand, within Rru_A3516at 4049.064 kb on + strand, within Rru_A3516at 4049.064 kb on + strand, within Rru_A3516at 4049.064 kb on + strand, within Rru_A3516at 4049.065 kb on - strand, within Rru_A3516at 4049.065 kb on - strand, within Rru_A3516at 4049.065 kb on - strand, within Rru_A3516at 4049.065 kb on - strand, within Rru_A3516at 4049.065 kb on - strand, within Rru_A3516at 4049.065 kb on - strand, within Rru_A3516at 4049.065 kb on - strand, within Rru_A3516at 4049.065 kb on - strand, within Rru_A3516at 4049.091 kb on - strand, within Rru_A3516at 4049.092 kb on + strand, within Rru_A3516at 4049.189 kb on - strandat 4049.473 kb on + strand, within Rru_A3517at 4049.473 kb on + strand, within Rru_A3517at 4049.473 kb on + strand, within Rru_A3517at 4049.500 kb on + strand, within Rru_A3517at 4049.501 kb on - strand, within Rru_A3517at 4049.521 kb on + strand, within Rru_A3517at 4049.522 kb on - strand, within Rru_A3517at 4049.557 kb on + strand, within Rru_A3517at 4049.558 kb on - strand, within Rru_A3517at 4049.558 kb on - strand, within Rru_A3517at 4049.560 kb on + strand, within Rru_A3517at 4049.560 kb on + strand, within Rru_A3517at 4049.561 kb on - strand, within Rru_A3517at 4049.587 kb on + strand, within Rru_A3517at 4049.588 kb on - strand, within Rru_A3517at 4049.588 kb on - strand, within Rru_A3517at 4049.588 kb on - strand, within Rru_A3517at 4049.705 kb on + strand, within Rru_A3517at 4049.705 kb on + strand, within Rru_A3517at 4049.705 kb on + strand, within Rru_A3517at 4049.705 kb on + strand, within Rru_A3517at 4049.705 kb on + strand, within Rru_A3517at 4049.705 kb on + strand, within Rru_A3517at 4049.706 kb on - strand, within Rru_A3517at 4049.744 kb on + strand, within Rru_A3517at 4049.744 kb on + strand, within Rru_A3517at 4049.745 kb on - strand, within Rru_A3517at 4049.745 kb on - strand, within Rru_A3517at 4049.988 kb on - strand, within Rru_A3517at 4049.988 kb on - strand, within Rru_A3517at 4050.011 kb on + strand, within Rru_A3517at 4050.011 kb on + strand, within Rru_A3517at 4050.012 kb on - strand, within Rru_A3517at 4050.012 kb on - strand, within Rru_A3517at 4050.012 kb on - strand, within Rru_A3517at 4050.158 kb on + strand, within Rru_A3517at 4050.158 kb on + strand, within Rru_A3517at 4050.158 kb on + strand, within Rru_A3517at 4050.158 kb on + strand, within Rru_A3517at 4050.158 kb on + strand, within Rru_A3517at 4050.159 kb on - strand, within Rru_A3517at 4050.159 kb on - strand, within Rru_A3517at 4050.159 kb on - strand, within Rru_A3517at 4050.159 kb on - strand, within Rru_A3517at 4050.296 kb on + strand, within Rru_A3517at 4050.297 kb on - strand, within Rru_A3517at 4050.297 kb on - strand, within Rru_A3517at 4050.297 kb on - strand, within Rru_A3517at 4050.297 kb on - strand, within Rru_A3517at 4050.297 kb on - strand, within Rru_A3517at 4050.399 kb on + strandat 4050.399 kb on + strandat 4050.439 kb on + strandat 4050.440 kb on - strandat 4050.440 kb on - strandat 4050.545 kb on + strandat 4050.658 kb on - strand, within Rru_A3518at 4050.700 kb on - strand, within Rru_A3518at 4050.903 kb on + strand, within Rru_A3518at 4051.106 kb on - strand, within Rru_A3518at 4051.106 kb on - strand, within Rru_A3518at 4051.110 kb on + strand, within Rru_A3518at 4051.111 kb on - strand, within Rru_A3518at 4051.111 kb on - strand, within Rru_A3518at 4051.202 kb on + strand, within Rru_A3518at 4051.203 kb on - strand, within Rru_A3518at 4051.203 kb on - strand, within Rru_A3518at 4051.203 kb on - strand, within Rru_A3518at 4051.203 kb on - strand, within Rru_A3518at 4051.232 kb on + strand, within Rru_A3518at 4051.232 kb on + strand, within Rru_A3518at 4051.232 kb on + strand, within Rru_A3518at 4051.232 kb on + strand, within Rru_A3518at 4051.232 kb on + strand, within Rru_A3518at 4051.232 kb on + strand, within Rru_A3518at 4051.232 kb on + strand, within Rru_A3518at 4051.232 kb on + strand, within Rru_A3518at 4051.232 kb on + strand, within Rru_A3518at 4051.232 kb on + strand, within Rru_A3518at 4051.232 kb on + strand, within Rru_A3518at 4051.233 kb on - strand, within Rru_A3518at 4051.233 kb on - strand, within Rru_A3518at 4051.233 kb on - strand, within Rru_A3518at 4051.233 kb on - strand, within Rru_A3518at 4051.233 kb on - strand, within Rru_A3518at 4051.233 kb on - strand, within Rru_A3518at 4051.233 kb on - strand, within Rru_A3518at 4051.233 kb on - strand, within Rru_A3518at 4051.394 kb on + strandat 4051.422 kb on + strandat 4051.422 kb on + strandat 4051.422 kb on + strandat 4051.422 kb on + strandat 4051.422 kb on + strandat 4051.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)
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4,048,476 + Rru_A3515 0.62 +0.5
4,048,476 + Rru_A3515 0.62 +0.1
4,048,476 + Rru_A3515 0.62 -0.4
4,048,477 - Rru_A3515 0.63 -0.1
4,048,497 + Rru_A3515 0.65 +0.3
4,048,498 - Rru_A3515 0.66 -0.0
4,048,498 - Rru_A3515 0.66 +0.2
4,048,526 + Rru_A3515 0.69 -1.1
4,048,526 + Rru_A3515 0.69 -0.0
4,048,526 + Rru_A3515 0.69 +0.1
4,048,526 + Rru_A3515 0.69 -0.1
4,048,526 + Rru_A3515 0.69 +0.4
4,048,527 - Rru_A3515 0.70 -0.0
4,048,527 - Rru_A3515 0.70 -0.2
4,048,527 - Rru_A3515 0.70 -0.7
4,048,527 - Rru_A3515 0.70 +0.3
4,048,527 - Rru_A3515 0.70 -0.2
4,048,602 + Rru_A3515 0.80 +0.0
4,048,602 + Rru_A3515 0.80 +1.1
4,048,602 + Rru_A3515 0.80 +1.1
4,048,602 + Rru_A3515 0.80 -0.2
4,048,602 + Rru_A3515 0.80 +0.2
4,048,602 + Rru_A3515 0.80 +1.1
4,048,602 + Rru_A3515 0.80 +1.1
4,048,603 - Rru_A3515 0.80 +0.1
4,048,603 - Rru_A3515 0.80 +0.1
4,048,603 - Rru_A3515 0.80 -0.5
4,048,603 - Rru_A3515 0.80 +0.5
4,048,604 + Rru_A3515 0.80 -0.2
4,048,605 - Rru_A3515 0.81 +0.7
4,048,741 - -0.3
4,048,862 - +0.1
4,048,901 + Rru_A3516 0.12 -0.0
4,048,901 + Rru_A3516 0.12 -0.6
4,048,902 - Rru_A3516 0.12 -1.4
4,048,902 - Rru_A3516 0.12 +0.1
4,049,064 + Rru_A3516 0.65 -0.1
4,049,064 + Rru_A3516 0.65 -0.1
4,049,064 + Rru_A3516 0.65 +1.1
4,049,064 + Rru_A3516 0.65 -0.3
4,049,064 + Rru_A3516 0.65 -0.5
4,049,065 - Rru_A3516 0.65 +0.4
4,049,065 - Rru_A3516 0.65 +0.0
4,049,065 - Rru_A3516 0.65 -0.1
4,049,065 - Rru_A3516 0.65 +0.0
4,049,065 - Rru_A3516 0.65 +0.9
4,049,065 - Rru_A3516 0.65 -0.0
4,049,065 - Rru_A3516 0.65 -0.7
4,049,065 - Rru_A3516 0.65 -0.5
4,049,091 - Rru_A3516 0.74 +0.7
4,049,092 + Rru_A3516 0.74 -0.2
4,049,189 - +0.3
4,049,473 + Rru_A3517 0.22 -0.0
4,049,473 + Rru_A3517 0.22 -0.4
4,049,473 + Rru_A3517 0.22 +0.1
4,049,500 + Rru_A3517 0.24 -0.3
4,049,501 - Rru_A3517 0.24 +0.2
4,049,521 + Rru_A3517 0.26 +0.1
4,049,522 - Rru_A3517 0.26 -0.0
4,049,557 + Rru_A3517 0.29 -0.2
4,049,558 - Rru_A3517 0.29 -0.5
4,049,558 - Rru_A3517 0.29 +0.4
4,049,560 + Rru_A3517 0.29 +0.5
4,049,560 + Rru_A3517 0.29 +0.3
4,049,561 - Rru_A3517 0.29 -0.6
4,049,587 + Rru_A3517 0.31 -0.7
4,049,588 - Rru_A3517 0.31 +0.3
4,049,588 - Rru_A3517 0.31 +0.7
4,049,588 - Rru_A3517 0.31 +0.0
4,049,705 + Rru_A3517 0.40 -0.2
4,049,705 + Rru_A3517 0.40 +2.6
4,049,705 + Rru_A3517 0.40 +1.1
4,049,705 + Rru_A3517 0.40 +0.0
4,049,705 + Rru_A3517 0.40 -0.3
4,049,705 + Rru_A3517 0.40 +0.6
4,049,706 - Rru_A3517 0.40 +0.1
4,049,744 + Rru_A3517 0.43 -0.1
4,049,744 + Rru_A3517 0.43 +0.2
4,049,745 - Rru_A3517 0.43 +0.2
4,049,745 - Rru_A3517 0.43 +1.1
4,049,988 - Rru_A3517 0.62 +0.1
4,049,988 - Rru_A3517 0.62 -1.2
4,050,011 + Rru_A3517 0.64 +0.1
4,050,011 + Rru_A3517 0.64 -0.2
4,050,012 - Rru_A3517 0.64 -0.2
4,050,012 - Rru_A3517 0.64 +0.2
4,050,012 - Rru_A3517 0.64 +0.4
4,050,158 + Rru_A3517 0.75 +0.2
4,050,158 + Rru_A3517 0.75 -0.2
4,050,158 + Rru_A3517 0.75 +0.8
4,050,158 + Rru_A3517 0.75 +0.0
4,050,158 + Rru_A3517 0.75 +0.1
4,050,159 - Rru_A3517 0.76 +0.6
4,050,159 - Rru_A3517 0.76 -0.2
4,050,159 - Rru_A3517 0.76 -0.8
4,050,159 - Rru_A3517 0.76 +0.7
4,050,296 + Rru_A3517 0.86 +0.4
4,050,297 - Rru_A3517 0.86 -0.2
4,050,297 - Rru_A3517 0.86 -0.5
4,050,297 - Rru_A3517 0.86 -0.2
4,050,297 - Rru_A3517 0.86 -0.1
4,050,297 - Rru_A3517 0.86 +1.1
4,050,399 + +1.7
4,050,399 + -0.1
4,050,439 + -0.5
4,050,440 - -0.2
4,050,440 - +1.1
4,050,545 + +0.4
4,050,658 - Rru_A3518 0.15 +0.4
4,050,700 - Rru_A3518 0.20 -0.4
4,050,903 + Rru_A3518 0.42 -0.0
4,051,106 - Rru_A3518 0.64 -0.7
4,051,106 - Rru_A3518 0.64 +0.1
4,051,110 + Rru_A3518 0.65 -0.0
4,051,111 - Rru_A3518 0.65 -0.2
4,051,111 - Rru_A3518 0.65 -0.2
4,051,202 + Rru_A3518 0.75 +0.9
4,051,203 - Rru_A3518 0.75 +0.1
4,051,203 - Rru_A3518 0.75 -0.9
4,051,203 - Rru_A3518 0.75 -0.1
4,051,203 - Rru_A3518 0.75 +0.4
4,051,232 + Rru_A3518 0.78 +0.3
4,051,232 + Rru_A3518 0.78 -0.1
4,051,232 + Rru_A3518 0.78 +0.5
4,051,232 + Rru_A3518 0.78 -0.8
4,051,232 + Rru_A3518 0.78 -0.0
4,051,232 + Rru_A3518 0.78 -0.3
4,051,232 + Rru_A3518 0.78 +1.1
4,051,232 + Rru_A3518 0.78 +0.1
4,051,232 + Rru_A3518 0.78 -0.9
4,051,232 + Rru_A3518 0.78 -0.6
4,051,232 + Rru_A3518 0.78 +0.2
4,051,233 - Rru_A3518 0.78 -0.2
4,051,233 - Rru_A3518 0.78 -0.4
4,051,233 - Rru_A3518 0.78 -0.4
4,051,233 - Rru_A3518 0.78 +0.8
4,051,233 - Rru_A3518 0.78 -0.6
4,051,233 - Rru_A3518 0.78 +0.2
4,051,233 - Rru_A3518 0.78 -0.5
4,051,233 - Rru_A3518 0.78 -0.1
4,051,394 + +0.0
4,051,422 + -1.2
4,051,422 + -0.0
4,051,422 + +1.1
4,051,422 + -0.7
4,051,422 + +0.2
4,051,423 - +0.1

Or see this region's nucleotide sequence