Experiment: Succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2298 and Rru_A2299 are separated by 29 nucleotides Rru_A2299 and Rru_A2300 are separated by 14 nucleotides
Rru_A2298: Rru_A2298 - hypothetical protein (NCBI), at 2,659,133 to 2,660,233
_A2298
Rru_A2299: Rru_A2299 - inner-membrane translocator (NCBI), at 2,660,263 to 2,661,270
_A2299
Rru_A2300: Rru_A2300 - inner-membrane translocator (NCBI), at 2,661,285 to 2,662,262
_A2300
Position (kb)
2660
2661
2662 Strain fitness (log2 ratio)
-1
0
1
2 at 2659.281 kb on + strand, within Rru_A2298 at 2659.383 kb on + strand, within Rru_A2298 at 2659.383 kb on + strand, within Rru_A2298 at 2659.390 kb on + strand, within Rru_A2298 at 2659.466 kb on - strand, within Rru_A2298 at 2659.467 kb on + strand, within Rru_A2298 at 2659.467 kb on + strand, within Rru_A2298 at 2659.467 kb on + strand, within Rru_A2298 at 2659.468 kb on - strand, within Rru_A2298 at 2659.468 kb on - strand, within Rru_A2298 at 2659.468 kb on - strand, within Rru_A2298 at 2659.489 kb on - strand, within Rru_A2298 at 2659.680 kb on + strand, within Rru_A2298 at 2659.680 kb on + strand, within Rru_A2298 at 2659.680 kb on + strand, within Rru_A2298 at 2659.680 kb on + strand, within Rru_A2298 at 2659.680 kb on + strand, within Rru_A2298 at 2659.680 kb on + strand, within Rru_A2298 at 2659.680 kb on + strand, within Rru_A2298 at 2659.680 kb on + strand, within Rru_A2298 at 2659.680 kb on + strand, within Rru_A2298 at 2659.681 kb on - strand, within Rru_A2298 at 2659.681 kb on - strand, within Rru_A2298 at 2659.681 kb on - strand, within Rru_A2298 at 2659.681 kb on - strand, within Rru_A2298 at 2659.681 kb on - strand, within Rru_A2298 at 2659.681 kb on - strand, within Rru_A2298 at 2659.681 kb on - strand, within Rru_A2298 at 2659.681 kb on - strand, within Rru_A2298 at 2659.748 kb on - strand, within Rru_A2298 at 2659.803 kb on + strand, within Rru_A2298 at 2659.804 kb on - strand, within Rru_A2298 at 2659.804 kb on - strand, within Rru_A2298 at 2659.830 kb on + strand, within Rru_A2298 at 2659.831 kb on - strand, within Rru_A2298 at 2659.971 kb on + strand, within Rru_A2298 at 2659.971 kb on + strand, within Rru_A2298 at 2659.971 kb on + strand, within Rru_A2298 at 2659.971 kb on + strand, within Rru_A2298 at 2659.971 kb on + strand, within Rru_A2298 at 2659.971 kb on + strand, within Rru_A2298 at 2659.972 kb on - strand, within Rru_A2298 at 2659.972 kb on - strand, within Rru_A2298 at 2659.972 kb on - strand, within Rru_A2298 at 2659.972 kb on - strand, within Rru_A2298 at 2660.014 kb on + strand, within Rru_A2298 at 2660.014 kb on + strand, within Rru_A2298 at 2660.015 kb on - strand, within Rru_A2298 at 2660.215 kb on + strand at 2660.480 kb on + strand, within Rru_A2299 at 2660.480 kb on + strand, within Rru_A2299 at 2660.480 kb on + strand, within Rru_A2299 at 2660.481 kb on - strand, within Rru_A2299 at 2660.493 kb on - strand, within Rru_A2299 at 2660.567 kb on + strand, within Rru_A2299 at 2660.567 kb on + strand, within Rru_A2299 at 2660.567 kb on + strand, within Rru_A2299 at 2660.568 kb on - strand, within Rru_A2299 at 2660.568 kb on - strand, within Rru_A2299 at 2660.568 kb on - strand, within Rru_A2299 at 2660.568 kb on - strand, within Rru_A2299 at 2660.574 kb on - strand, within Rru_A2299 at 2660.574 kb on - strand, within Rru_A2299 at 2661.085 kb on + strand, within Rru_A2299 at 2661.110 kb on + strand, within Rru_A2299 at 2661.110 kb on + strand, within Rru_A2299 at 2661.111 kb on - strand, within Rru_A2299 at 2661.111 kb on - strand, within Rru_A2299 at 2661.132 kb on - strand, within Rru_A2299 at 2661.134 kb on + strand, within Rru_A2299 at 2661.135 kb on - strand, within Rru_A2299 at 2661.147 kb on + strand, within Rru_A2299 at 2661.147 kb on + strand, within Rru_A2299 at 2661.595 kb on + strand, within Rru_A2300 at 2661.596 kb on - strand, within Rru_A2300 at 2661.667 kb on + strand, within Rru_A2300 at 2661.667 kb on + strand, within Rru_A2300 at 2661.667 kb on + strand, within Rru_A2300 at 2661.667 kb on + strand, within Rru_A2300 at 2661.667 kb on + strand, within Rru_A2300 at 2661.667 kb on + strand, within Rru_A2300 at 2661.667 kb on + strand, within Rru_A2300 at 2661.667 kb on + strand, within Rru_A2300 at 2661.667 kb on + strand, within Rru_A2300 at 2661.667 kb on + strand, within Rru_A2300 at 2661.667 kb on + strand, within Rru_A2300 at 2661.668 kb on - strand, within Rru_A2300 at 2661.668 kb on - strand, within Rru_A2300 at 2661.668 kb on - strand, within Rru_A2300 at 2661.668 kb on - strand, within Rru_A2300 at 2661.668 kb on - strand, within Rru_A2300 at 2661.668 kb on - strand, within Rru_A2300 at 2661.668 kb on - strand, within Rru_A2300 at 2661.689 kb on + strand, within Rru_A2300 at 2661.690 kb on - strand, within Rru_A2300 at 2661.730 kb on + strand, within Rru_A2300 at 2661.730 kb on + strand, within Rru_A2300 at 2661.730 kb on + strand, within Rru_A2300 at 2661.757 kb on + strand, within Rru_A2300 at 2661.757 kb on + strand, within Rru_A2300 at 2661.757 kb on + strand, within Rru_A2300 at 2661.888 kb on - strand, within Rru_A2300 at 2661.888 kb on - strand, within Rru_A2300 at 2662.042 kb on + strand, within Rru_A2300 at 2662.042 kb on + strand, within Rru_A2300 at 2662.042 kb on + strand, within Rru_A2300 at 2662.042 kb on + strand, within Rru_A2300 at 2662.042 kb on + strand, within Rru_A2300 at 2662.042 kb on + strand, within Rru_A2300 at 2662.042 kb on + strand, within Rru_A2300 at 2662.043 kb on - strand, within Rru_A2300 at 2662.043 kb on - strand, within Rru_A2300 at 2662.043 kb on - strand, within Rru_A2300 at 2662.043 kb on - strand, within Rru_A2300 at 2662.163 kb on + strand, within Rru_A2300 at 2662.164 kb on - strand, within Rru_A2300 at 2662.164 kb on - strand, within Rru_A2300
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C) remove 2,659,281 + Rru_A2298 0.13 -0.3 2,659,383 + Rru_A2298 0.23 +1.3 2,659,383 + Rru_A2298 0.23 -0.2 2,659,390 + Rru_A2298 0.23 +0.4 2,659,466 - Rru_A2298 0.30 -0.2 2,659,467 + Rru_A2298 0.30 -0.1 2,659,467 + Rru_A2298 0.30 +0.2 2,659,467 + Rru_A2298 0.30 +0.7 2,659,468 - Rru_A2298 0.30 -0.2 2,659,468 - Rru_A2298 0.30 -0.9 2,659,468 - Rru_A2298 0.30 +0.0 2,659,489 - Rru_A2298 0.32 -0.7 2,659,680 + Rru_A2298 0.50 -0.1 2,659,680 + Rru_A2298 0.50 -1.2 2,659,680 + Rru_A2298 0.50 -0.3 2,659,680 + Rru_A2298 0.50 +0.8 2,659,680 + Rru_A2298 0.50 -0.2 2,659,680 + Rru_A2298 0.50 -0.2 2,659,680 + Rru_A2298 0.50 +0.2 2,659,680 + Rru_A2298 0.50 +1.3 2,659,680 + Rru_A2298 0.50 -0.8 2,659,681 - Rru_A2298 0.50 +0.1 2,659,681 - Rru_A2298 0.50 -0.3 2,659,681 - Rru_A2298 0.50 +0.3 2,659,681 - Rru_A2298 0.50 +0.5 2,659,681 - Rru_A2298 0.50 +0.2 2,659,681 - Rru_A2298 0.50 +0.3 2,659,681 - Rru_A2298 0.50 +0.3 2,659,681 - Rru_A2298 0.50 -0.1 2,659,748 - Rru_A2298 0.56 +0.3 2,659,803 + Rru_A2298 0.61 +0.5 2,659,804 - Rru_A2298 0.61 +1.7 2,659,804 - Rru_A2298 0.61 -0.2 2,659,830 + Rru_A2298 0.63 +0.9 2,659,831 - Rru_A2298 0.63 -0.1 2,659,971 + Rru_A2298 0.76 -0.2 2,659,971 + Rru_A2298 0.76 -0.0 2,659,971 + Rru_A2298 0.76 +0.4 2,659,971 + Rru_A2298 0.76 +0.0 2,659,971 + Rru_A2298 0.76 -0.5 2,659,971 + Rru_A2298 0.76 +1.3 2,659,972 - Rru_A2298 0.76 -1.0 2,659,972 - Rru_A2298 0.76 +0.6 2,659,972 - Rru_A2298 0.76 +0.5 2,659,972 - Rru_A2298 0.76 -0.3 2,660,014 + Rru_A2298 0.80 +0.4 2,660,014 + Rru_A2298 0.80 -0.8 2,660,015 - Rru_A2298 0.80 -0.4 2,660,215 + +1.3 2,660,480 + Rru_A2299 0.22 -0.2 2,660,480 + Rru_A2299 0.22 -0.6 2,660,480 + Rru_A2299 0.22 +0.0 2,660,481 - Rru_A2299 0.22 -1.5 2,660,493 - Rru_A2299 0.23 -0.5 2,660,567 + Rru_A2299 0.30 +0.9 2,660,567 + Rru_A2299 0.30 +0.7 2,660,567 + Rru_A2299 0.30 +0.9 2,660,568 - Rru_A2299 0.30 -0.5 2,660,568 - Rru_A2299 0.30 +1.9 2,660,568 - Rru_A2299 0.30 -0.2 2,660,568 - Rru_A2299 0.30 +0.5 2,660,574 - Rru_A2299 0.31 -0.3 2,660,574 - Rru_A2299 0.31 +0.3 2,661,085 + Rru_A2299 0.82 -0.1 2,661,110 + Rru_A2299 0.84 +0.8 2,661,110 + Rru_A2299 0.84 +0.6 2,661,111 - Rru_A2299 0.84 -0.0 2,661,111 - Rru_A2299 0.84 +0.3 2,661,132 - Rru_A2299 0.86 -0.5 2,661,134 + Rru_A2299 0.86 +0.9 2,661,135 - Rru_A2299 0.87 +0.0 2,661,147 + Rru_A2299 0.88 -0.5 2,661,147 + Rru_A2299 0.88 +1.3 2,661,595 + Rru_A2300 0.32 +1.3 2,661,596 - Rru_A2300 0.32 -0.4 2,661,667 + Rru_A2300 0.39 -0.4 2,661,667 + Rru_A2300 0.39 +0.4 2,661,667 + Rru_A2300 0.39 -1.0 2,661,667 + Rru_A2300 0.39 +1.3 2,661,667 + Rru_A2300 0.39 -0.1 2,661,667 + Rru_A2300 0.39 +1.3 2,661,667 + Rru_A2300 0.39 +0.1 2,661,667 + Rru_A2300 0.39 -0.5 2,661,667 + Rru_A2300 0.39 +0.8 2,661,667 + Rru_A2300 0.39 +0.0 2,661,667 + Rru_A2300 0.39 -0.0 2,661,668 - Rru_A2300 0.39 +0.4 2,661,668 - Rru_A2300 0.39 -0.4 2,661,668 - Rru_A2300 0.39 -0.4 2,661,668 - Rru_A2300 0.39 +0.6 2,661,668 - Rru_A2300 0.39 +0.3 2,661,668 - Rru_A2300 0.39 +0.3 2,661,668 - Rru_A2300 0.39 -0.4 2,661,689 + Rru_A2300 0.41 +0.6 2,661,690 - Rru_A2300 0.41 -0.8 2,661,730 + Rru_A2300 0.46 +1.3 2,661,730 + Rru_A2300 0.46 +0.2 2,661,730 + Rru_A2300 0.46 +0.7 2,661,757 + Rru_A2300 0.48 -0.2 2,661,757 + Rru_A2300 0.48 -1.0 2,661,757 + Rru_A2300 0.48 -0.4 2,661,888 - Rru_A2300 0.62 +0.3 2,661,888 - Rru_A2300 0.62 +1.3 2,662,042 + Rru_A2300 0.77 -1.0 2,662,042 + Rru_A2300 0.77 -0.0 2,662,042 + Rru_A2300 0.77 -0.7 2,662,042 + Rru_A2300 0.77 +0.4 2,662,042 + Rru_A2300 0.77 -0.8 2,662,042 + Rru_A2300 0.77 +0.3 2,662,042 + Rru_A2300 0.77 -0.3 2,662,043 - Rru_A2300 0.78 -0.2 2,662,043 - Rru_A2300 0.78 +0.1 2,662,043 - Rru_A2300 0.78 +0.1 2,662,043 - Rru_A2300 0.78 -0.1 2,662,163 + Rru_A2300 0.90 -0.9 2,662,164 - Rru_A2300 0.90 +0.1 2,662,164 - Rru_A2300 0.90 +1.3
Or see this region's nucleotide sequence