Experiment: Succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0390 and Rru_AR0015 are separated by 115 nucleotides Rru_AR0015 and Rru_A0391 are separated by 83 nucleotides Rru_A0391 and Rru_A0392 are separated by 27 nucleotides Rru_A0392 and Rru_A0393 are separated by 14 nucleotides Rru_A0393 and Rru_A0394 are separated by 10 nucleotides
Rru_A0390: Rru_A0390 - hypothetical protein (NCBI), at 466,945 to 467,925
_A0390
Rru_AR0015: Rru_AR0015 - tRNA-Leu (NCBI), at 468,041 to 468,126
_AR0015
Rru_A0391: Rru_A0391 - hypothetical protein (NCBI), at 468,210 to 468,458
_A0391
Rru_A0392: Rru_A0392 - Molybdopterin binding domain (NCBI), at 468,486 to 469,253
_A0392
Rru_A0393: Rru_A0393 - NUDIX hydrolase (NCBI), at 469,268 to 469,723
_A0393
Rru_A0394: Rru_A0394 - Amino-acid N-acetyltransferase (NCBI), at 469,734 to 470,972
_A0394
Position (kb) 468
469
470 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 467.776 kb on + strand, within Rru_A0390 at 467.776 kb on + strand, within Rru_A0390 at 467.777 kb on - strand, within Rru_A0390 at 467.871 kb on + strand at 467.872 kb on - strand at 467.988 kb on - strand at 468.168 kb on - strand at 468.168 kb on - strand at 468.301 kb on + strand, within Rru_A0391 at 468.302 kb on - strand, within Rru_A0391 at 468.302 kb on - strand, within Rru_A0391 at 468.302 kb on - strand, within Rru_A0391 at 468.628 kb on + strand, within Rru_A0392 at 468.628 kb on + strand, within Rru_A0392 at 468.628 kb on + strand, within Rru_A0392 at 468.629 kb on - strand, within Rru_A0392 at 468.629 kb on - strand, within Rru_A0392 at 468.629 kb on - strand, within Rru_A0392 at 468.629 kb on - strand, within Rru_A0392 at 468.629 kb on - strand, within Rru_A0392 at 468.925 kb on + strand, within Rru_A0392 at 468.925 kb on + strand, within Rru_A0392 at 468.926 kb on - strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.269 kb on + strand at 469.270 kb on - strand at 469.324 kb on - strand, within Rru_A0393 at 469.408 kb on - strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.765 kb on + strand at 469.765 kb on + strand at 469.765 kb on + strand at 469.766 kb on - strand at 469.853 kb on + strand at 469.853 kb on + strand at 469.854 kb on - strand at 469.879 kb on + strand, within Rru_A0394
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C) remove 467,776 + Rru_A0390 0.85 -0.1 467,776 + Rru_A0390 0.85 +0.1 467,777 - Rru_A0390 0.85 +0.2 467,871 + +0.3 467,872 - -0.3 467,988 - -0.2 468,168 - +1.2 468,168 - -0.1 468,301 + Rru_A0391 0.37 +0.2 468,302 - Rru_A0391 0.37 +0.0 468,302 - Rru_A0391 0.37 +0.1 468,302 - Rru_A0391 0.37 +0.8 468,628 + Rru_A0392 0.18 +0.3 468,628 + Rru_A0392 0.18 -0.2 468,628 + Rru_A0392 0.18 +0.0 468,629 - Rru_A0392 0.19 -0.4 468,629 - Rru_A0392 0.19 -0.5 468,629 - Rru_A0392 0.19 +0.0 468,629 - Rru_A0392 0.19 +0.5 468,629 - Rru_A0392 0.19 -0.3 468,925 + Rru_A0392 0.57 +0.1 468,925 + Rru_A0392 0.57 +0.2 468,926 - Rru_A0392 0.57 +0.1 469,048 + Rru_A0392 0.73 +0.3 469,048 + Rru_A0392 0.73 -0.4 469,048 + Rru_A0392 0.73 -0.4 469,048 + Rru_A0392 0.73 +2.9 469,269 + -0.6 469,270 - -0.0 469,324 - Rru_A0393 0.12 -0.4 469,408 - Rru_A0393 0.31 -0.2 469,437 + Rru_A0393 0.37 -0.6 469,437 + Rru_A0393 0.37 -0.4 469,437 + Rru_A0393 0.37 -0.2 469,437 + Rru_A0393 0.37 -1.5 469,437 + Rru_A0393 0.37 -0.8 469,437 + Rru_A0393 0.37 -0.6 469,438 - Rru_A0393 0.37 +1.2 469,438 - Rru_A0393 0.37 +0.0 469,438 - Rru_A0393 0.37 -1.4 469,438 - Rru_A0393 0.37 +1.2 469,438 - Rru_A0393 0.37 -0.9 469,438 - Rru_A0393 0.37 -0.4 469,765 + -2.0 469,765 + -2.1 469,765 + -3.2 469,766 - -5.1 469,853 + -4.1 469,853 + -2.6 469,854 - -3.4 469,879 + Rru_A0394 0.12 +0.2
Or see this region's nucleotide sequence