Experiment: m.b. A22 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_820 and HP15_821 are separated by 153 nucleotides HP15_821 and HP15_822 are separated by 188 nucleotides
HP15_820: HP15_820 - transcriptional regulator, LysR family protein, at 837,843 to 838,736
_820
HP15_821: HP15_821 - acyl-CoA dehydrogenase family protein, at 838,890 to 840,101
_821
HP15_822: HP15_822 - short-chain dehydrogenase/reductase SDR, at 840,290 to 841,108
_822
Position (kb) 838
839
840
841 Strain fitness (log2 ratio) -1
0
1
2 at 837.966 kb on - strand, within HP15_820 at 838.088 kb on - strand, within HP15_820 at 838.103 kb on + strand, within HP15_820 at 838.237 kb on + strand, within HP15_820 at 838.725 kb on + strand at 838.733 kb on - strand at 838.822 kb on + strand at 838.822 kb on + strand at 838.822 kb on + strand at 838.830 kb on - strand at 838.830 kb on - strand at 838.842 kb on + strand at 839.009 kb on + strand at 839.119 kb on - strand, within HP15_821 at 839.271 kb on + strand, within HP15_821 at 839.276 kb on + strand, within HP15_821 at 839.487 kb on - strand, within HP15_821 at 839.487 kb on - strand, within HP15_821 at 839.493 kb on + strand, within HP15_821 at 839.564 kb on - strand, within HP15_821 at 839.653 kb on + strand, within HP15_821 at 839.820 kb on - strand, within HP15_821 at 839.883 kb on + strand, within HP15_821 at 839.925 kb on + strand, within HP15_821 at 839.940 kb on - strand, within HP15_821 at 839.973 kb on - strand, within HP15_821 at 840.073 kb on + strand at 840.073 kb on + strand at 840.073 kb on + strand at 840.073 kb on + strand at 840.073 kb on + strand at 840.081 kb on - strand at 840.081 kb on - strand at 840.081 kb on - strand at 840.081 kb on - strand at 840.081 kb on - strand at 840.337 kb on + strand at 840.401 kb on - strand, within HP15_822 at 840.551 kb on + strand, within HP15_822 at 840.746 kb on - strand, within HP15_822 at 840.746 kb on - strand, within HP15_822 at 840.748 kb on + strand, within HP15_822 at 840.820 kb on - strand, within HP15_822 at 840.962 kb on + strand, within HP15_822 at 840.983 kb on + strand, within HP15_822 at 840.991 kb on - strand, within HP15_822 at 841.001 kb on - strand, within HP15_822 at 841.042 kb on - strand at 841.042 kb on - strand at 841.067 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.08 mg/ml remove 837,966 - HP15_820 0.14 +0.2 838,088 - HP15_820 0.27 -0.3 838,103 + HP15_820 0.29 -0.3 838,237 + HP15_820 0.44 +0.0 838,725 + +0.5 838,733 - -0.2 838,822 + -0.2 838,822 + +0.3 838,822 + +0.3 838,830 - -1.0 838,830 - -0.2 838,842 + +0.2 839,009 + -1.5 839,119 - HP15_821 0.19 +0.2 839,271 + HP15_821 0.31 +0.2 839,276 + HP15_821 0.32 +0.2 839,487 - HP15_821 0.49 +0.1 839,487 - HP15_821 0.49 +0.1 839,493 + HP15_821 0.50 +0.2 839,564 - HP15_821 0.56 -0.3 839,653 + HP15_821 0.63 +0.6 839,820 - HP15_821 0.77 -0.1 839,883 + HP15_821 0.82 +0.1 839,925 + HP15_821 0.85 +0.0 839,940 - HP15_821 0.87 -0.2 839,973 - HP15_821 0.89 -0.1 840,073 + -0.3 840,073 + +0.1 840,073 + +0.2 840,073 + -0.3 840,073 + +0.2 840,081 - +0.3 840,081 - +0.2 840,081 - -0.2 840,081 - -0.1 840,081 - +0.1 840,337 + -0.3 840,401 - HP15_822 0.14 -1.2 840,551 + HP15_822 0.32 -0.1 840,746 - HP15_822 0.56 -0.1 840,746 - HP15_822 0.56 -0.3 840,748 + HP15_822 0.56 +0.4 840,820 - HP15_822 0.65 -0.2 840,962 + HP15_822 0.82 +0.3 840,983 + HP15_822 0.85 +0.1 840,991 - HP15_822 0.86 +0.8 841,001 - HP15_822 0.87 +0.3 841,042 - +0.5 841,042 - +1.8 841,067 + +0.9
Or see this region's nucleotide sequence