Experiment: m.b. A22 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_71 and HP15_72 are separated by 126 nucleotides HP15_72 and HP15_73 are separated by 846 nucleotides
HP15_71: HP15_71 - hypothetical protein, at 79,518 to 79,655
_71
HP15_72: HP15_72 - conserved hypothetical protein, at 79,782 to 80,045
_72
HP15_73: HP15_73 - hypothetical protein, at 80,892 to 81,146
_73
Position (kb) 79
80
81 Strain fitness (log2 ratio) -1
0
1
2 at 78.797 kb on - strand at 78.902 kb on + strand at 78.940 kb on - strand at 78.958 kb on - strand at 79.020 kb on - strand at 79.032 kb on + strand at 79.089 kb on + strand at 79.101 kb on + strand at 79.157 kb on + strand at 79.239 kb on + strand at 79.247 kb on - strand at 79.256 kb on - strand at 79.274 kb on + strand at 79.274 kb on + strand at 79.277 kb on - strand at 79.329 kb on - strand at 79.354 kb on - strand at 79.381 kb on + strand at 79.381 kb on + strand at 79.381 kb on + strand at 79.381 kb on + strand at 79.389 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.498 kb on + strand at 79.506 kb on - strand at 79.516 kb on - strand at 79.525 kb on + strand at 79.528 kb on - strand at 79.582 kb on + strand, within HP15_71 at 79.607 kb on + strand, within HP15_71 at 79.638 kb on + strand, within HP15_71 at 79.671 kb on - strand at 79.801 kb on - strand at 79.819 kb on + strand, within HP15_72 at 79.820 kb on + strand, within HP15_72 at 79.827 kb on - strand, within HP15_72 at 79.838 kb on + strand, within HP15_72 at 79.843 kb on + strand, within HP15_72 at 79.877 kb on - strand, within HP15_72 at 79.877 kb on - strand, within HP15_72 at 79.877 kb on - strand, within HP15_72 at 79.954 kb on - strand, within HP15_72 at 80.050 kb on + strand at 80.050 kb on + strand at 80.050 kb on + strand at 80.053 kb on + strand at 80.053 kb on + strand at 80.110 kb on + strand at 80.111 kb on + strand at 80.130 kb on + strand at 80.138 kb on - strand at 80.267 kb on + strand at 80.309 kb on + strand at 80.347 kb on + strand at 80.419 kb on + strand at 80.419 kb on + strand at 80.427 kb on - strand at 80.444 kb on + strand at 80.444 kb on + strand at 80.713 kb on + strand at 80.713 kb on + strand at 80.721 kb on + strand at 80.721 kb on - strand at 80.721 kb on - strand at 80.771 kb on - strand at 80.781 kb on - strand at 80.786 kb on - strand at 80.815 kb on + strand at 80.912 kb on - strand at 80.921 kb on - strand, within HP15_73 at 80.921 kb on - strand, within HP15_73 at 80.935 kb on + strand, within HP15_73 at 80.945 kb on + strand, within HP15_73 at 80.965 kb on + strand, within HP15_73 at 80.973 kb on - strand, within HP15_73 at 80.973 kb on - strand, within HP15_73
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.08 mg/ml remove 78,797 - -0.0 78,902 + -0.5 78,940 - -0.2 78,958 - +0.1 79,020 - -0.1 79,032 + -0.3 79,089 + -0.2 79,101 + -0.1 79,157 + +0.0 79,239 + -0.2 79,247 - -1.0 79,256 - +0.3 79,274 + +0.8 79,274 + +2.0 79,277 - -0.3 79,329 - -0.0 79,354 - +0.3 79,381 + +0.4 79,381 + -0.1 79,381 + +0.3 79,381 + -0.5 79,389 - -0.0 79,421 - -0.1 79,421 - -0.3 79,498 + +0.3 79,506 - -0.0 79,516 - -0.5 79,525 + -0.1 79,528 - +0.4 79,582 + HP15_71 0.46 +0.3 79,607 + HP15_71 0.64 +0.0 79,638 + HP15_71 0.87 +0.4 79,671 - +1.0 79,801 - +0.3 79,819 + HP15_72 0.14 -0.1 79,820 + HP15_72 0.14 -0.5 79,827 - HP15_72 0.17 -0.2 79,838 + HP15_72 0.21 +0.3 79,843 + HP15_72 0.23 -1.3 79,877 - HP15_72 0.36 +0.7 79,877 - HP15_72 0.36 -0.0 79,877 - HP15_72 0.36 -0.4 79,954 - HP15_72 0.65 -0.3 80,050 + -0.4 80,050 + -0.1 80,050 + -0.0 80,053 + -0.0 80,053 + +0.1 80,110 + -0.1 80,111 + -0.6 80,130 + +0.8 80,138 - +0.0 80,267 + +0.1 80,309 + -0.3 80,347 + -0.5 80,419 + +0.2 80,419 + -0.7 80,427 - -0.4 80,444 + +0.0 80,444 + -0.0 80,713 + -0.4 80,713 + +0.1 80,721 + -0.4 80,721 - -0.8 80,721 - -0.1 80,771 - -0.1 80,781 - +0.1 80,786 - +0.5 80,815 + -0.1 80,912 - -0.2 80,921 - HP15_73 0.11 -0.4 80,921 - HP15_73 0.11 -0.1 80,935 + HP15_73 0.17 +0.6 80,945 + HP15_73 0.21 -0.5 80,965 + HP15_73 0.29 -0.2 80,973 - HP15_73 0.32 -0.1 80,973 - HP15_73 0.32 +0.2
Or see this region's nucleotide sequence