Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07090

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07070 and PGA1_c07080 are separated by 53 nucleotidesPGA1_c07080 and PGA1_c07090 are separated by 129 nucleotidesPGA1_c07090 and PGA1_c07100 are separated by 409 nucleotides PGA1_c07070: PGA1_c07070 - acetyltransferase domain-containing protein, at 726,344 to 726,871 _c07070 PGA1_c07080: PGA1_c07080 - small-conductance mechanosensitive channel, at 726,925 to 727,731 _c07080 PGA1_c07090: PGA1_c07090 - large-conductance mechanosensitive channel, at 727,861 to 728,295 _c07090 PGA1_c07100: PGA1_c07100 - RTX toxins and related Ca2+-binding proteins, at 728,705 to 731,062 _c07100 Position (kb) 727 728 729Strain fitness (log2 ratio) -2 -1 0 1at 726.989 kb on - strandat 727.026 kb on + strand, within PGA1_c07080at 727.040 kb on + strand, within PGA1_c07080at 727.048 kb on - strand, within PGA1_c07080at 727.095 kb on + strand, within PGA1_c07080at 727.227 kb on - strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.261 kb on - strand, within PGA1_c07080at 727.261 kb on - strand, within PGA1_c07080at 727.261 kb on - strand, within PGA1_c07080at 727.295 kb on + strand, within PGA1_c07080at 727.328 kb on - strand, within PGA1_c07080at 727.374 kb on + strand, within PGA1_c07080at 727.374 kb on + strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.443 kb on + strand, within PGA1_c07080at 727.451 kb on - strand, within PGA1_c07080at 727.463 kb on + strand, within PGA1_c07080at 727.463 kb on - strand, within PGA1_c07080at 727.549 kb on - strand, within PGA1_c07080at 727.622 kb on - strand, within PGA1_c07080at 727.627 kb on + strand, within PGA1_c07080at 727.657 kb on + strandat 727.703 kb on + strandat 727.713 kb on + strandat 727.721 kb on - strandat 727.830 kb on - strandat 727.839 kb on + strandat 727.958 kb on - strand, within PGA1_c07090at 727.992 kb on - strand, within PGA1_c07090at 728.045 kb on - strand, within PGA1_c07090at 728.086 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.220 kb on - strand, within PGA1_c07090at 728.307 kb on - strandat 728.342 kb on + strandat 728.347 kb on + strandat 728.349 kb on + strandat 728.349 kb on + strandat 728.349 kb on + strandat 728.357 kb on - strandat 728.466 kb on - strandat 728.510 kb on + strandat 728.512 kb on - strandat 728.513 kb on - strandat 728.515 kb on + strandat 728.562 kb on + strandat 728.562 kb on + strandat 728.569 kb on + strandat 728.570 kb on - strandat 728.570 kb on - strandat 728.570 kb on - strandat 728.577 kb on - strandat 728.602 kb on + strandat 728.624 kb on + strandat 728.634 kb on + strandat 728.639 kb on + strandat 728.664 kb on - strandat 728.674 kb on - strandat 728.685 kb on + strandat 728.698 kb on - strandat 728.698 kb on - strandat 728.748 kb on - strandat 728.753 kb on + strandat 728.756 kb on - strandat 728.763 kb on + strandat 728.843 kb on - strandat 728.847 kb on + strandat 728.847 kb on + strandat 728.855 kb on - strandat 728.855 kb on - strandat 728.930 kb on + strandat 729.014 kb on + strand, within PGA1_c07100at 729.022 kb on - strand, within PGA1_c07100at 729.022 kb on - strand, within PGA1_c07100at 729.029 kb on + strand, within PGA1_c07100at 729.052 kb on - strand, within PGA1_c07100at 729.062 kb on - strand, within PGA1_c07100at 729.078 kb on - strand, within PGA1_c07100at 729.095 kb on + strand, within PGA1_c07100at 729.125 kb on - strand, within PGA1_c07100at 729.197 kb on - strand, within PGA1_c07100at 729.202 kb on - strand, within PGA1_c07100at 729.242 kb on - strand, within PGA1_c07100at 729.253 kb on + strand, within PGA1_c07100

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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726,989 - +0.3
727,026 + PGA1_c07080 0.13 +0.4
727,040 + PGA1_c07080 0.14 +0.5
727,048 - PGA1_c07080 0.15 -0.1
727,095 + PGA1_c07080 0.21 -0.1
727,227 - PGA1_c07080 0.37 -0.3
727,253 + PGA1_c07080 0.41 -1.5
727,253 + PGA1_c07080 0.41 +1.0
727,253 + PGA1_c07080 0.41 +0.5
727,253 + PGA1_c07080 0.41 +0.8
727,253 + PGA1_c07080 0.41 +0.7
727,261 - PGA1_c07080 0.42 +0.7
727,261 - PGA1_c07080 0.42 -0.8
727,261 - PGA1_c07080 0.42 -0.8
727,295 + PGA1_c07080 0.46 -0.0
727,328 - PGA1_c07080 0.50 +0.1
727,374 + PGA1_c07080 0.56 -0.7
727,374 + PGA1_c07080 0.56 -0.2
727,382 - PGA1_c07080 0.57 -0.7
727,382 - PGA1_c07080 0.57 +0.6
727,382 - PGA1_c07080 0.57 -0.5
727,382 - PGA1_c07080 0.57 -0.1
727,382 - PGA1_c07080 0.57 -0.1
727,443 + PGA1_c07080 0.64 -2.3
727,451 - PGA1_c07080 0.65 -0.8
727,463 + PGA1_c07080 0.67 -0.5
727,463 - PGA1_c07080 0.67 +1.6
727,549 - PGA1_c07080 0.77 -0.2
727,622 - PGA1_c07080 0.86 +0.4
727,627 + PGA1_c07080 0.87 +1.3
727,657 + +0.5
727,703 + +0.0
727,713 + +0.0
727,721 - +1.2
727,830 - -0.1
727,839 + -0.7
727,958 - PGA1_c07090 0.22 -0.6
727,992 - PGA1_c07090 0.30 -0.0
728,045 - PGA1_c07090 0.42 -0.4
728,086 + PGA1_c07090 0.52 -1.7
728,111 + PGA1_c07090 0.57 +0.1
728,111 + PGA1_c07090 0.57 +0.2
728,111 + PGA1_c07090 0.57 -0.8
728,111 + PGA1_c07090 0.57 -0.6
728,111 + PGA1_c07090 0.57 -0.5
728,111 + PGA1_c07090 0.57 -0.8
728,220 - PGA1_c07090 0.83 -1.1
728,307 - -1.6
728,342 + -0.1
728,347 + +1.0
728,349 + +0.4
728,349 + +1.5
728,349 + -0.4
728,357 - -0.2
728,466 - -1.1
728,510 + +0.5
728,512 - -0.6
728,513 - -0.1
728,515 + +0.6
728,562 + -0.2
728,562 + +0.1
728,569 + -0.5
728,570 - -1.1
728,570 - -1.3
728,570 - +1.4
728,577 - +0.6
728,602 + +0.2
728,624 + +0.1
728,634 + +0.1
728,639 + +0.9
728,664 - -0.1
728,674 - -1.3
728,685 + -0.1
728,698 - +0.2
728,698 - +0.2
728,748 - -0.8
728,753 + -0.3
728,756 - +0.2
728,763 + +1.3
728,843 - +0.5
728,847 + -0.0
728,847 + +0.1
728,855 - -1.1
728,855 - -0.3
728,930 + -1.0
729,014 + PGA1_c07100 0.13 -0.1
729,022 - PGA1_c07100 0.13 +0.3
729,022 - PGA1_c07100 0.13 -0.4
729,029 + PGA1_c07100 0.14 -2.0
729,052 - PGA1_c07100 0.15 +0.6
729,062 - PGA1_c07100 0.15 -0.1
729,078 - PGA1_c07100 0.16 -0.4
729,095 + PGA1_c07100 0.17 +0.4
729,125 - PGA1_c07100 0.18 -0.6
729,197 - PGA1_c07100 0.21 -0.2
729,202 - PGA1_c07100 0.21 -0.5
729,242 - PGA1_c07100 0.23 +0.2
729,253 + PGA1_c07100 0.23 +1.0

Or see this region's nucleotide sequence