Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00030

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00020 and PGA1_78p00030 are separated by 9 nucleotidesPGA1_78p00030 and PGA1_78p00040 are separated by 132 nucleotides PGA1_78p00020: PGA1_78p00020 - putative ubiquinone biosynthesis protein, at 1,525 to 2,943 _78p00020 PGA1_78p00030: PGA1_78p00030 - putative multicopper oxidase, at 2,953 to 4,410 _78p00030 PGA1_78p00040: PGA1_78p00040 - hydrogen peroxide-inducible genes activator OxyR, at 4,543 to 5,487 _78p00040 Position (kb) 2 3 4 5Strain fitness (log2 ratio) -1 0 1 2at 2.156 kb on - strand, within PGA1_78p00020at 2.786 kb on + strand, within PGA1_78p00020at 2.929 kb on - strandat 3.036 kb on - strandat 3.564 kb on - strand, within PGA1_78p00030at 3.572 kb on + strand, within PGA1_78p00030at 3.815 kb on + strand, within PGA1_78p00030at 3.945 kb on + strand, within PGA1_78p00030at 4.144 kb on - strand, within PGA1_78p00030at 4.843 kb on - strand, within PGA1_78p00040at 4.865 kb on - strand, within PGA1_78p00040at 4.872 kb on + strand, within PGA1_78p00040at 5.324 kb on - strand, within PGA1_78p00040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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2,156 - PGA1_78p00020 0.44 -0.4
2,786 + PGA1_78p00020 0.89 -0.7
2,929 - -0.5
3,036 - -0.4
3,564 - PGA1_78p00030 0.42 +0.1
3,572 + PGA1_78p00030 0.42 +1.9
3,815 + PGA1_78p00030 0.59 -0.3
3,945 + PGA1_78p00030 0.68 +1.2
4,144 - PGA1_78p00030 0.82 -0.6
4,843 - PGA1_78p00040 0.32 +0.2
4,865 - PGA1_78p00040 0.34 -1.2
4,872 + PGA1_78p00040 0.35 +0.9
5,324 - PGA1_78p00040 0.83 -1.6

Or see this region's nucleotide sequence