Experiment: m.b. Furfuryl Alcohol 0.064 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01220 and PGA1_262p01230 are separated by 12 nucleotides PGA1_262p01230 and PGA1_262p01240 are separated by 130 nucleotides PGA1_262p01240 and PGA1_262p01250 are separated by 74 nucleotides PGA1_262p01250 and PGA1_262p01260 are separated by 203 nucleotides
PGA1_262p01220: PGA1_262p01220 - nitric oxide reductase subunit B, at 134,078 to 135,436
_262p01220
PGA1_262p01230: PGA1_262p01230 - nitric oxide reductase subunit C, at 135,449 to 135,901
_262p01230
PGA1_262p01240: PGA1_262p01240 - hydrid cluster protein-associated redox disulfide domain, at 136,032 to 136,259
_262p01240
PGA1_262p01250: PGA1_262p01250 - transcriptional regulator, crp family, at 136,334 to 137,038
_262p01250
PGA1_262p01260: PGA1_262p01260 - copper-containing nitrite reductase NirK, at 137,242 to 138,465
_262p01260
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1 at 135.446 kb on + strand at 135.454 kb on - strand at 135.454 kb on - strand at 135.473 kb on + strand at 135.746 kb on - strand, within PGA1_262p01230 at 135.897 kb on + strand at 135.903 kb on + strand at 135.910 kb on - strand at 136.009 kb on - strand at 136.153 kb on - strand, within PGA1_262p01240 at 136.225 kb on + strand, within PGA1_262p01240 at 136.298 kb on + strand at 136.304 kb on + strand at 136.304 kb on + strand at 136.317 kb on - strand at 136.364 kb on - strand at 136.582 kb on + strand, within PGA1_262p01250 at 136.610 kb on + strand, within PGA1_262p01250 at 136.814 kb on - strand, within PGA1_262p01250 at 136.950 kb on + strand, within PGA1_262p01250 at 137.313 kb on - strand at 137.830 kb on + strand, within PGA1_262p01260 at 137.979 kb on + strand, within PGA1_262p01260 at 137.987 kb on - strand, within PGA1_262p01260
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol% remove 135,446 + -1.0 135,454 - -1.4 135,454 - -1.3 135,473 + -2.3 135,746 - PGA1_262p01230 0.66 -0.2 135,897 + -0.0 135,903 + -0.4 135,910 - -0.8 136,009 - -0.2 136,153 - PGA1_262p01240 0.53 -0.3 136,225 + PGA1_262p01240 0.85 +0.3 136,298 + -0.4 136,304 + -0.5 136,304 + -0.6 136,317 - -1.6 136,364 - -1.6 136,582 + PGA1_262p01250 0.35 +1.3 136,610 + PGA1_262p01250 0.39 +0.9 136,814 - PGA1_262p01250 0.68 -0.3 136,950 + PGA1_262p01250 0.87 -0.4 137,313 - +0.1 137,830 + PGA1_262p01260 0.48 +0.4 137,979 + PGA1_262p01260 0.60 +0.6 137,987 - PGA1_262p01260 0.61 -0.7
Or see this region's nucleotide sequence