Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00070

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00060 and PGA1_262p00070 overlap by 17 nucleotidesPGA1_262p00070 and PGA1_262p00080 are separated by 28 nucleotidesPGA1_262p00080 and PGA1_262p00090 are separated by 7 nucleotides PGA1_262p00060: PGA1_262p00060 - putative glycosyl transferase, at 6,672 to 7,988 _262p00060 PGA1_262p00070: PGA1_262p00070 - Lipid A core - O-antigen ligase and related enzymes, at 7,972 to 9,258 _262p00070 PGA1_262p00080: PGA1_262p00080 - hypothetical protein, at 9,287 to 10,054 _262p00080 PGA1_262p00090: PGA1_262p00090 - putative exopolysaccharide biosynthesis transport protein, at 10,062 to 12,173 _262p00090 Position (kb) 7 8 9 10Strain fitness (log2 ratio) -2 -1 0 1at 6.972 kb on - strand, within PGA1_262p00060at 6.979 kb on + strand, within PGA1_262p00060at 6.993 kb on - strand, within PGA1_262p00060at 7.096 kb on + strand, within PGA1_262p00060at 7.263 kb on - strand, within PGA1_262p00060at 7.297 kb on - strand, within PGA1_262p00060at 7.772 kb on + strand, within PGA1_262p00060at 7.813 kb on + strand, within PGA1_262p00060at 7.909 kb on - strandat 7.932 kb on + strandat 7.973 kb on - strandat 7.990 kb on - strandat 8.050 kb on - strandat 8.166 kb on - strand, within PGA1_262p00070at 8.231 kb on + strand, within PGA1_262p00070at 8.262 kb on + strand, within PGA1_262p00070at 8.287 kb on - strand, within PGA1_262p00070at 8.394 kb on + strand, within PGA1_262p00070at 8.408 kb on + strand, within PGA1_262p00070at 8.481 kb on - strand, within PGA1_262p00070at 8.481 kb on - strand, within PGA1_262p00070at 8.516 kb on - strand, within PGA1_262p00070at 8.895 kb on + strand, within PGA1_262p00070at 8.914 kb on + strand, within PGA1_262p00070at 8.922 kb on - strand, within PGA1_262p00070at 8.926 kb on + strand, within PGA1_262p00070at 8.981 kb on + strand, within PGA1_262p00070at 8.984 kb on + strand, within PGA1_262p00070at 9.007 kb on + strand, within PGA1_262p00070at 9.037 kb on - strand, within PGA1_262p00070at 9.079 kb on - strand, within PGA1_262p00070at 9.103 kb on - strand, within PGA1_262p00070at 9.252 kb on + strandat 9.376 kb on - strand, within PGA1_262p00080at 9.472 kb on - strand, within PGA1_262p00080at 9.540 kb on - strand, within PGA1_262p00080at 9.777 kb on - strand, within PGA1_262p00080at 9.779 kb on + strand, within PGA1_262p00080at 9.779 kb on + strand, within PGA1_262p00080at 9.855 kb on - strand, within PGA1_262p00080at 9.965 kb on - strand, within PGA1_262p00080at 9.983 kb on + strandat 10.051 kb on + strandat 10.065 kb on + strandat 10.123 kb on + strandat 10.131 kb on - strandat 10.213 kb on + strandat 10.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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6,972 - PGA1_262p00060 0.23 +1.3
6,979 + PGA1_262p00060 0.23 -0.2
6,993 - PGA1_262p00060 0.24 -0.6
7,096 + PGA1_262p00060 0.32 +0.1
7,263 - PGA1_262p00060 0.45 +1.0
7,297 - PGA1_262p00060 0.47 -0.6
7,772 + PGA1_262p00060 0.84 -0.7
7,813 + PGA1_262p00060 0.87 +0.5
7,909 - -0.6
7,932 + -0.7
7,973 - +0.5
7,990 - -0.8
8,050 - +0.1
8,166 - PGA1_262p00070 0.15 -0.6
8,231 + PGA1_262p00070 0.20 +0.6
8,262 + PGA1_262p00070 0.23 +1.0
8,287 - PGA1_262p00070 0.24 +0.1
8,394 + PGA1_262p00070 0.33 +0.6
8,408 + PGA1_262p00070 0.34 -1.1
8,481 - PGA1_262p00070 0.40 -0.1
8,481 - PGA1_262p00070 0.40 +1.0
8,516 - PGA1_262p00070 0.42 +1.2
8,895 + PGA1_262p00070 0.72 +0.6
8,914 + PGA1_262p00070 0.73 -0.7
8,922 - PGA1_262p00070 0.74 +0.4
8,926 + PGA1_262p00070 0.74 +1.2
8,981 + PGA1_262p00070 0.78 -2.2
8,984 + PGA1_262p00070 0.79 -0.7
9,007 + PGA1_262p00070 0.80 +0.4
9,037 - PGA1_262p00070 0.83 +0.5
9,079 - PGA1_262p00070 0.86 -0.4
9,103 - PGA1_262p00070 0.88 +0.2
9,252 + +0.4
9,376 - PGA1_262p00080 0.12 +0.2
9,472 - PGA1_262p00080 0.24 +0.6
9,540 - PGA1_262p00080 0.33 +1.1
9,777 - PGA1_262p00080 0.64 +0.6
9,779 + PGA1_262p00080 0.64 -0.7
9,779 + PGA1_262p00080 0.64 +0.1
9,855 - PGA1_262p00080 0.74 +0.3
9,965 - PGA1_262p00080 0.88 -0.6
9,983 + +0.4
10,051 + -0.9
10,065 + +0.4
10,123 + +0.7
10,131 - +0.3
10,213 + +0.2
10,221 - -0.6

Or see this region's nucleotide sequence