Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00050

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00040 and PGA1_262p00050 are separated by 171 nucleotidesPGA1_262p00050 and PGA1_262p00060 overlap by 8 nucleotides PGA1_262p00040: PGA1_262p00040 - sulfotransferase-like protein, at 4,316 to 5,230 _262p00040 PGA1_262p00050: PGA1_262p00050 - putative glycosyl transferase, at 5,402 to 6,679 _262p00050 PGA1_262p00060: PGA1_262p00060 - putative glycosyl transferase, at 6,672 to 7,988 _262p00060 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 4.449 kb on - strand, within PGA1_262p00040at 4.626 kb on + strand, within PGA1_262p00040at 4.634 kb on - strand, within PGA1_262p00040at 4.643 kb on + strand, within PGA1_262p00040at 4.682 kb on + strand, within PGA1_262p00040at 4.764 kb on + strand, within PGA1_262p00040at 4.788 kb on - strand, within PGA1_262p00040at 4.905 kb on + strand, within PGA1_262p00040at 4.983 kb on - strand, within PGA1_262p00040at 5.019 kb on + strand, within PGA1_262p00040at 5.101 kb on + strand, within PGA1_262p00040at 5.172 kb on + strandat 5.237 kb on + strandat 5.395 kb on + strandat 5.526 kb on + strandat 5.846 kb on - strand, within PGA1_262p00050at 6.031 kb on + strand, within PGA1_262p00050at 6.039 kb on - strand, within PGA1_262p00050at 6.088 kb on + strand, within PGA1_262p00050at 6.137 kb on + strand, within PGA1_262p00050at 6.139 kb on + strand, within PGA1_262p00050at 6.287 kb on + strand, within PGA1_262p00050at 6.295 kb on - strand, within PGA1_262p00050at 6.340 kb on + strand, within PGA1_262p00050at 6.347 kb on - strand, within PGA1_262p00050at 6.374 kb on - strand, within PGA1_262p00050at 6.420 kb on + strand, within PGA1_262p00050at 6.428 kb on - strand, within PGA1_262p00050at 6.774 kb on + strandat 6.972 kb on - strand, within PGA1_262p00060at 6.979 kb on + strand, within PGA1_262p00060at 6.993 kb on - strand, within PGA1_262p00060at 7.096 kb on + strand, within PGA1_262p00060at 7.263 kb on - strand, within PGA1_262p00060at 7.297 kb on - strand, within PGA1_262p00060

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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4,449 - PGA1_262p00040 0.15 -0.0
4,626 + PGA1_262p00040 0.34 -1.0
4,634 - PGA1_262p00040 0.35 +0.2
4,643 + PGA1_262p00040 0.36 -0.5
4,682 + PGA1_262p00040 0.40 +0.5
4,764 + PGA1_262p00040 0.49 +0.7
4,788 - PGA1_262p00040 0.52 -0.3
4,905 + PGA1_262p00040 0.64 -0.8
4,983 - PGA1_262p00040 0.73 +0.5
5,019 + PGA1_262p00040 0.77 +0.3
5,101 + PGA1_262p00040 0.86 -2.4
5,172 + -0.7
5,237 + -0.3
5,395 + -0.9
5,526 + -1.2
5,846 - PGA1_262p00050 0.35 +0.7
6,031 + PGA1_262p00050 0.49 +0.5
6,039 - PGA1_262p00050 0.50 -1.1
6,088 + PGA1_262p00050 0.54 -0.9
6,137 + PGA1_262p00050 0.58 +1.7
6,139 + PGA1_262p00050 0.58 +0.8
6,287 + PGA1_262p00050 0.69 -0.2
6,295 - PGA1_262p00050 0.70 -0.7
6,340 + PGA1_262p00050 0.73 +0.8
6,347 - PGA1_262p00050 0.74 +0.1
6,374 - PGA1_262p00050 0.76 +0.0
6,420 + PGA1_262p00050 0.80 +1.8
6,428 - PGA1_262p00050 0.80 -0.5
6,774 + -0.5
6,972 - PGA1_262p00060 0.23 +1.3
6,979 + PGA1_262p00060 0.23 -0.2
6,993 - PGA1_262p00060 0.24 -0.6
7,096 + PGA1_262p00060 0.32 +0.1
7,263 - PGA1_262p00060 0.45 +1.0
7,297 - PGA1_262p00060 0.47 -0.6

Or see this region's nucleotide sequence