Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32670

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c32650 and PGA1_c32660 are separated by 80 nucleotidesPGA1_c32660 and PGA1_c32670 are separated by 300 nucleotidesPGA1_c32670 and PGA1_c32680 are separated by 45 nucleotidesPGA1_c32680 and PGA1_c32690 are separated by 10 nucleotides PGA1_c32650: PGA1_c32650 - DNA-binding response regulator, at 3,423,883 to 3,424,587 _c32650 PGA1_c32660: PGA1_c32660 - WGR domain., at 3,424,668 to 3,424,895 _c32660 PGA1_c32670: PGA1_c32670 - putative phosphoglycerate mutase family protein, at 3,425,196 to 3,425,846 _c32670 PGA1_c32680: PGA1_c32680 - putative glutathione S-transferase, at 3,425,892 to 3,426,509 _c32680 PGA1_c32690: PGA1_c32690 - putative saccharopine dehydrogenase (NAD+, L-lysine-forming), at 3,426,520 to 3,427,572 _c32690 Position (kb) 3425 3426Strain fitness (log2 ratio) -2 -1 0 1at 3424.324 kb on + strand, within PGA1_c32650at 3424.332 kb on - strand, within PGA1_c32650at 3424.345 kb on + strand, within PGA1_c32650at 3424.345 kb on + strand, within PGA1_c32650at 3424.345 kb on + strand, within PGA1_c32650at 3424.399 kb on + strand, within PGA1_c32650at 3424.442 kb on + strand, within PGA1_c32650at 3424.444 kb on + strand, within PGA1_c32650at 3424.453 kb on + strand, within PGA1_c32650at 3424.453 kb on + strand, within PGA1_c32650at 3424.463 kb on + strand, within PGA1_c32650at 3424.463 kb on + strand, within PGA1_c32650at 3424.463 kb on + strand, within PGA1_c32650at 3424.471 kb on - strand, within PGA1_c32650at 3424.528 kb on - strandat 3424.547 kb on + strandat 3424.570 kb on + strandat 3424.611 kb on + strandat 3424.625 kb on + strandat 3424.664 kb on + strandat 3424.799 kb on - strand, within PGA1_c32660at 3424.820 kb on - strand, within PGA1_c32660at 3424.843 kb on + strand, within PGA1_c32660at 3424.856 kb on - strand, within PGA1_c32660at 3424.889 kb on + strandat 3424.907 kb on - strandat 3424.920 kb on - strandat 3424.934 kb on + strandat 3424.944 kb on + strandat 3424.949 kb on + strandat 3424.982 kb on + strandat 3424.996 kb on - strandat 3424.996 kb on - strandat 3424.998 kb on - strandat 3425.037 kb on - strandat 3425.044 kb on - strandat 3425.072 kb on - strandat 3425.105 kb on + strandat 3425.202 kb on - strandat 3425.218 kb on + strandat 3425.228 kb on + strandat 3425.228 kb on + strandat 3425.228 kb on + strandat 3425.228 kb on + strandat 3425.228 kb on + strandat 3425.236 kb on - strandat 3425.236 kb on - strandat 3425.315 kb on + strand, within PGA1_c32670at 3425.339 kb on - strand, within PGA1_c32670at 3425.462 kb on + strand, within PGA1_c32670at 3425.471 kb on - strand, within PGA1_c32670at 3425.493 kb on + strand, within PGA1_c32670at 3425.507 kb on - strand, within PGA1_c32670at 3425.515 kb on + strand, within PGA1_c32670at 3425.596 kb on + strand, within PGA1_c32670at 3425.622 kb on + strand, within PGA1_c32670at 3425.647 kb on + strand, within PGA1_c32670at 3425.655 kb on - strand, within PGA1_c32670at 3425.655 kb on - strand, within PGA1_c32670at 3425.681 kb on + strand, within PGA1_c32670at 3425.681 kb on + strand, within PGA1_c32670at 3425.852 kb on + strandat 3425.852 kb on + strandat 3425.852 kb on + strandat 3425.852 kb on + strandat 3425.852 kb on + strandat 3425.855 kb on - strandat 3425.860 kb on - strandat 3425.860 kb on - strandat 3425.860 kb on - strandat 3425.877 kb on - strandat 3425.939 kb on - strandat 3426.034 kb on - strand, within PGA1_c32680at 3426.034 kb on - strand, within PGA1_c32680at 3426.101 kb on - strand, within PGA1_c32680at 3426.256 kb on - strand, within PGA1_c32680at 3426.289 kb on + strand, within PGA1_c32680at 3426.319 kb on + strand, within PGA1_c32680at 3426.349 kb on - strand, within PGA1_c32680at 3426.361 kb on + strand, within PGA1_c32680at 3426.386 kb on + strand, within PGA1_c32680at 3426.387 kb on + strand, within PGA1_c32680at 3426.406 kb on - strand, within PGA1_c32680at 3426.465 kb on - strandat 3426.467 kb on + strandat 3426.506 kb on + strandat 3426.534 kb on + strandat 3426.572 kb on + strandat 3426.579 kb on - strandat 3426.579 kb on - strandat 3426.610 kb on + strandat 3426.635 kb on + strand, within PGA1_c32690at 3426.661 kb on + strand, within PGA1_c32690at 3426.669 kb on - strand, within PGA1_c32690at 3426.713 kb on + strand, within PGA1_c32690at 3426.713 kb on + strand, within PGA1_c32690at 3426.794 kb on + strand, within PGA1_c32690at 3426.816 kb on - strand, within PGA1_c32690at 3426.840 kb on + strand, within PGA1_c32690

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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3,424,324 + PGA1_c32650 0.63 +1.6
3,424,332 - PGA1_c32650 0.64 -0.4
3,424,345 + PGA1_c32650 0.66 +1.2
3,424,345 + PGA1_c32650 0.66 +0.1
3,424,345 + PGA1_c32650 0.66 -0.8
3,424,399 + PGA1_c32650 0.73 -0.2
3,424,442 + PGA1_c32650 0.79 +0.6
3,424,444 + PGA1_c32650 0.80 +0.2
3,424,453 + PGA1_c32650 0.81 +0.5
3,424,453 + PGA1_c32650 0.81 -0.6
3,424,463 + PGA1_c32650 0.82 +0.1
3,424,463 + PGA1_c32650 0.82 +0.5
3,424,463 + PGA1_c32650 0.82 -0.7
3,424,471 - PGA1_c32650 0.83 -0.9
3,424,528 - +0.9
3,424,547 + +0.6
3,424,570 + -2.6
3,424,611 + -0.5
3,424,625 + +0.4
3,424,664 + +0.3
3,424,799 - PGA1_c32660 0.57 -0.3
3,424,820 - PGA1_c32660 0.67 +0.9
3,424,843 + PGA1_c32660 0.77 +0.2
3,424,856 - PGA1_c32660 0.82 -0.4
3,424,889 + -0.2
3,424,907 - +0.1
3,424,920 - -0.2
3,424,934 + -0.0
3,424,944 + +0.2
3,424,949 + +0.4
3,424,982 + +0.1
3,424,996 - -0.2
3,424,996 - -0.0
3,424,998 - +0.1
3,425,037 - +0.8
3,425,044 - +0.0
3,425,072 - -1.0
3,425,105 + +0.2
3,425,202 - -1.1
3,425,218 + -0.9
3,425,228 + -0.5
3,425,228 + +0.1
3,425,228 + -0.4
3,425,228 + -0.5
3,425,228 + -0.6
3,425,236 - +0.5
3,425,236 - +0.3
3,425,315 + PGA1_c32670 0.18 +1.5
3,425,339 - PGA1_c32670 0.22 -0.6
3,425,462 + PGA1_c32670 0.41 +0.7
3,425,471 - PGA1_c32670 0.42 +0.4
3,425,493 + PGA1_c32670 0.46 +0.4
3,425,507 - PGA1_c32670 0.48 -1.2
3,425,515 + PGA1_c32670 0.49 +0.5
3,425,596 + PGA1_c32670 0.61 +0.3
3,425,622 + PGA1_c32670 0.65 -0.7
3,425,647 + PGA1_c32670 0.69 +0.4
3,425,655 - PGA1_c32670 0.71 +0.3
3,425,655 - PGA1_c32670 0.71 +0.7
3,425,681 + PGA1_c32670 0.75 +0.1
3,425,681 + PGA1_c32670 0.75 +1.2
3,425,852 + +0.1
3,425,852 + +0.1
3,425,852 + +0.1
3,425,852 + +0.1
3,425,852 + -0.8
3,425,855 - -0.3
3,425,860 - +0.2
3,425,860 - +0.3
3,425,860 - +0.7
3,425,877 - +0.4
3,425,939 - -0.1
3,426,034 - PGA1_c32680 0.23 +0.3
3,426,034 - PGA1_c32680 0.23 +0.5
3,426,101 - PGA1_c32680 0.34 -0.3
3,426,256 - PGA1_c32680 0.59 -0.5
3,426,289 + PGA1_c32680 0.64 +0.3
3,426,319 + PGA1_c32680 0.69 -0.4
3,426,349 - PGA1_c32680 0.74 -1.0
3,426,361 + PGA1_c32680 0.76 +1.5
3,426,386 + PGA1_c32680 0.80 +0.4
3,426,387 + PGA1_c32680 0.80 -1.2
3,426,406 - PGA1_c32680 0.83 +0.0
3,426,465 - +0.6
3,426,467 + +0.6
3,426,506 + +0.7
3,426,534 + +0.1
3,426,572 + -0.2
3,426,579 - +0.4
3,426,579 - -0.9
3,426,610 + +0.8
3,426,635 + PGA1_c32690 0.11 +0.3
3,426,661 + PGA1_c32690 0.13 -0.3
3,426,669 - PGA1_c32690 0.14 +1.3
3,426,713 + PGA1_c32690 0.18 +0.6
3,426,713 + PGA1_c32690 0.18 -0.2
3,426,794 + PGA1_c32690 0.26 +0.7
3,426,816 - PGA1_c32690 0.28 -0.3
3,426,840 + PGA1_c32690 0.30 +0.6

Or see this region's nucleotide sequence