Experiment: m.b. A22 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3074 and HP15_3075 are separated by 395 nucleotides HP15_3075 and HP15_3076 are separated by 75 nucleotides HP15_3076 and HP15_3077 are separated by 22 nucleotides
HP15_3074: HP15_3074 - membrane protein containing peptidase M41, FtsH / ATPase, AAA-type, core, at 3,227,088 to 3,229,022
_3074
HP15_3075: HP15_3075 - RNA-binding, CRM domain, prokaryote, at 3,229,418 to 3,229,729
_3075
HP15_3076: HP15_3076 - protein containing prokaryotic transcription elongation factor GreA domain, at 3,229,805 to 3,230,266
_3076
HP15_3077: HP15_3077 - carbamoyl-phosphate synthase, large subunit, at 3,230,289 to 3,233,507
_3077
Position (kb)
3229
3230 Strain fitness (log2 ratio)
-1
0
1 at 3229.137 kb on + strand at 3229.172 kb on + strand at 3229.236 kb on - strand at 3229.245 kb on + strand at 3229.245 kb on + strand at 3229.254 kb on - strand at 3229.263 kb on - strand at 3229.639 kb on + strand, within HP15_3075 at 3229.647 kb on - strand, within HP15_3075 at 3229.811 kb on + strand at 3229.822 kb on + strand at 3230.107 kb on + strand, within HP15_3076 at 3230.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.08 mg/ml remove 3,229,137 + +1.0 3,229,172 + +0.3 3,229,236 - +0.3 3,229,245 + -0.0 3,229,245 + +0.1 3,229,254 - +0.1 3,229,263 - +0.2 3,229,639 + HP15_3075 0.71 -0.4 3,229,647 - HP15_3075 0.73 -0.4 3,229,811 + +0.6 3,229,822 + -0.4 3,230,107 + HP15_3076 0.65 -0.3 3,230,288 - -0.3
Or see this region's nucleotide sequence