Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23540

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23530 and PGA1_c23540 are separated by 210 nucleotidesPGA1_c23540 and PGA1_c23550 are separated by 301 nucleotides PGA1_c23530: PGA1_c23530 - Uncharacterized conserved protein, at 2,453,257 to 2,454,360 _c23530 PGA1_c23540: PGA1_c23540 - O-succinylhomoserine sulfhydrylase MetZ, at 2,454,571 to 2,455,761 _c23540 PGA1_c23550: PGA1_c23550 - putative intracellular septation protein, at 2,456,063 to 2,456,677 _c23550 Position (kb) 2454 2455 2456Strain fitness (log2 ratio) -2 -1 0 1 2at 2454.363 kb on - strandat 2454.418 kb on + strandat 2454.498 kb on - strandat 2454.551 kb on - strandat 2454.570 kb on - strandat 2454.582 kb on - strandat 2454.585 kb on + strandat 2454.585 kb on + strandat 2454.654 kb on + strandat 2454.654 kb on + strandat 2454.654 kb on + strandat 2454.662 kb on - strandat 2454.670 kb on - strandat 2454.677 kb on + strandat 2454.680 kb on - strandat 2454.695 kb on - strand, within PGA1_c23540at 2454.699 kb on + strand, within PGA1_c23540at 2454.831 kb on + strand, within PGA1_c23540at 2454.836 kb on + strand, within PGA1_c23540at 2454.836 kb on + strand, within PGA1_c23540at 2454.932 kb on + strand, within PGA1_c23540at 2454.959 kb on + strand, within PGA1_c23540at 2454.967 kb on - strand, within PGA1_c23540at 2454.967 kb on - strand, within PGA1_c23540at 2455.001 kb on + strand, within PGA1_c23540at 2455.012 kb on + strand, within PGA1_c23540at 2455.029 kb on + strand, within PGA1_c23540at 2455.036 kb on - strand, within PGA1_c23540at 2455.037 kb on - strand, within PGA1_c23540at 2455.050 kb on + strand, within PGA1_c23540at 2455.062 kb on + strand, within PGA1_c23540at 2455.070 kb on - strand, within PGA1_c23540at 2455.070 kb on - strand, within PGA1_c23540at 2455.116 kb on - strand, within PGA1_c23540at 2455.123 kb on - strand, within PGA1_c23540at 2455.181 kb on - strand, within PGA1_c23540at 2455.224 kb on - strand, within PGA1_c23540at 2455.229 kb on - strand, within PGA1_c23540at 2455.251 kb on - strand, within PGA1_c23540at 2455.256 kb on - strand, within PGA1_c23540at 2455.365 kb on + strand, within PGA1_c23540at 2455.377 kb on + strand, within PGA1_c23540at 2455.377 kb on + strand, within PGA1_c23540at 2455.377 kb on + strand, within PGA1_c23540at 2455.377 kb on + strand, within PGA1_c23540at 2455.495 kb on - strand, within PGA1_c23540at 2455.517 kb on + strand, within PGA1_c23540at 2455.530 kb on - strand, within PGA1_c23540at 2455.564 kb on + strand, within PGA1_c23540at 2455.580 kb on - strand, within PGA1_c23540at 2455.582 kb on + strand, within PGA1_c23540at 2455.586 kb on - strand, within PGA1_c23540at 2455.641 kb on + strand, within PGA1_c23540at 2455.659 kb on - strandat 2455.659 kb on - strandat 2455.693 kb on - strandat 2455.839 kb on - strandat 2455.839 kb on - strandat 2455.841 kb on - strandat 2455.862 kb on - strandat 2456.757 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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2,454,363 - -1.0
2,454,418 + -0.4
2,454,498 - +0.3
2,454,551 - +0.0
2,454,570 - +0.1
2,454,582 - -0.3
2,454,585 + -0.7
2,454,585 + -0.2
2,454,654 + -2.3
2,454,654 + +2.1
2,454,654 + +1.2
2,454,662 - +2.4
2,454,670 - +1.4
2,454,677 + -0.2
2,454,680 - +0.6
2,454,695 - PGA1_c23540 0.10 +0.1
2,454,699 + PGA1_c23540 0.11 +0.6
2,454,831 + PGA1_c23540 0.22 +0.3
2,454,836 + PGA1_c23540 0.22 +1.5
2,454,836 + PGA1_c23540 0.22 +0.8
2,454,932 + PGA1_c23540 0.30 +1.0
2,454,959 + PGA1_c23540 0.33 +2.4
2,454,967 - PGA1_c23540 0.33 +0.6
2,454,967 - PGA1_c23540 0.33 +1.7
2,455,001 + PGA1_c23540 0.36 -0.2
2,455,012 + PGA1_c23540 0.37 -0.2
2,455,029 + PGA1_c23540 0.38 +1.5
2,455,036 - PGA1_c23540 0.39 -0.1
2,455,037 - PGA1_c23540 0.39 +2.1
2,455,050 + PGA1_c23540 0.40 +0.1
2,455,062 + PGA1_c23540 0.41 +0.5
2,455,070 - PGA1_c23540 0.42 +0.9
2,455,070 - PGA1_c23540 0.42 +1.2
2,455,116 - PGA1_c23540 0.46 +1.4
2,455,123 - PGA1_c23540 0.46 -0.3
2,455,181 - PGA1_c23540 0.51 +0.9
2,455,224 - PGA1_c23540 0.55 +1.3
2,455,229 - PGA1_c23540 0.55 +1.3
2,455,251 - PGA1_c23540 0.57 +0.6
2,455,256 - PGA1_c23540 0.58 -0.2
2,455,365 + PGA1_c23540 0.67 +1.1
2,455,377 + PGA1_c23540 0.68 +0.2
2,455,377 + PGA1_c23540 0.68 +1.8
2,455,377 + PGA1_c23540 0.68 +1.7
2,455,377 + PGA1_c23540 0.68 +2.2
2,455,495 - PGA1_c23540 0.78 -0.2
2,455,517 + PGA1_c23540 0.79 +1.5
2,455,530 - PGA1_c23540 0.81 -0.2
2,455,564 + PGA1_c23540 0.83 +0.4
2,455,580 - PGA1_c23540 0.85 +1.4
2,455,582 + PGA1_c23540 0.85 -1.1
2,455,586 - PGA1_c23540 0.85 +2.4
2,455,641 + PGA1_c23540 0.90 +0.6
2,455,659 - +1.5
2,455,659 - +0.8
2,455,693 - +0.0
2,455,839 - +0.1
2,455,839 - +0.0
2,455,841 - -1.0
2,455,862 - -0.5
2,456,757 - +0.3

Or see this region's nucleotide sequence