Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22370

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c22350 and PGA1_c22360 are separated by 87 nucleotidesPGA1_c22360 and PGA1_c22370 are separated by 64 nucleotidesPGA1_c22370 and PGA1_c22380 are separated by 399 nucleotidesPGA1_c22380 and PGA1_c22390 are separated by 16 nucleotides PGA1_c22350: PGA1_c22350 - hypothetical protein, at 2,321,383 to 2,321,853 _c22350 PGA1_c22360: PGA1_c22360 - hypothetical protein, at 2,321,941 to 2,322,387 _c22360 PGA1_c22370: PGA1_c22370 - hypothetical protein, at 2,322,452 to 2,322,787 _c22370 PGA1_c22380: PGA1_c22380 - Bacteriophage protein of unknown function (DUF646)., at 2,323,187 to 2,323,642 _c22380 PGA1_c22390: PGA1_c22390 - Phage head-tail joining protein., at 2,323,659 to 2,324,015 _c22390 Position (kb) 2322 2323Strain fitness (log2 ratio) -2 -1 0 1 2at 2321.459 kb on + strand, within PGA1_c22350at 2321.482 kb on + strand, within PGA1_c22350at 2321.490 kb on - strand, within PGA1_c22350at 2321.508 kb on + strand, within PGA1_c22350at 2321.508 kb on + strand, within PGA1_c22350at 2321.516 kb on - strand, within PGA1_c22350at 2321.516 kb on - strand, within PGA1_c22350at 2321.516 kb on - strand, within PGA1_c22350at 2321.516 kb on - strand, within PGA1_c22350at 2321.516 kb on - strand, within PGA1_c22350at 2321.575 kb on - strand, within PGA1_c22350at 2321.575 kb on - strand, within PGA1_c22350at 2321.630 kb on - strand, within PGA1_c22350at 2321.631 kb on - strand, within PGA1_c22350at 2321.706 kb on + strand, within PGA1_c22350at 2321.716 kb on + strand, within PGA1_c22350at 2321.720 kb on + strand, within PGA1_c22350at 2321.776 kb on + strand, within PGA1_c22350at 2321.784 kb on - strand, within PGA1_c22350at 2321.784 kb on - strand, within PGA1_c22350at 2321.814 kb on + strandat 2321.822 kb on - strandat 2321.822 kb on - strandat 2321.822 kb on - strandat 2321.822 kb on - strandat 2321.822 kb on - strandat 2321.822 kb on - strandat 2321.831 kb on - strandat 2321.841 kb on - strandat 2321.871 kb on + strandat 2321.871 kb on + strandat 2321.879 kb on - strandat 2321.887 kb on - strandat 2321.918 kb on + strandat 2321.926 kb on - strandat 2322.004 kb on - strand, within PGA1_c22360at 2322.023 kb on - strand, within PGA1_c22360at 2322.055 kb on + strand, within PGA1_c22360at 2322.055 kb on + strand, within PGA1_c22360at 2322.055 kb on + strand, within PGA1_c22360at 2322.060 kb on + strand, within PGA1_c22360at 2322.109 kb on + strand, within PGA1_c22360at 2322.117 kb on - strand, within PGA1_c22360at 2322.130 kb on + strand, within PGA1_c22360at 2322.137 kb on - strand, within PGA1_c22360at 2322.138 kb on - strand, within PGA1_c22360at 2322.138 kb on - strand, within PGA1_c22360at 2322.169 kb on + strand, within PGA1_c22360at 2322.177 kb on - strand, within PGA1_c22360at 2322.204 kb on + strand, within PGA1_c22360at 2322.244 kb on + strand, within PGA1_c22360at 2322.252 kb on - strand, within PGA1_c22360at 2322.272 kb on - strand, within PGA1_c22360at 2322.292 kb on + strand, within PGA1_c22360at 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.363 kb on + strandat 2322.365 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.371 kb on - strandat 2322.390 kb on + strandat 2322.407 kb on - strandat 2322.431 kb on + strandat 2322.437 kb on - strandat 2322.459 kb on + strandat 2322.464 kb on + strandat 2322.503 kb on + strand, within PGA1_c22370at 2322.597 kb on + strand, within PGA1_c22370at 2322.597 kb on + strand, within PGA1_c22370at 2322.597 kb on - strand, within PGA1_c22370at 2322.597 kb on - strand, within PGA1_c22370at 2322.605 kb on - strand, within PGA1_c22370at 2322.605 kb on - strand, within PGA1_c22370at 2322.624 kb on - strand, within PGA1_c22370at 2322.643 kb on + strand, within PGA1_c22370at 2322.643 kb on + strand, within PGA1_c22370at 2322.682 kb on + strand, within PGA1_c22370at 2322.682 kb on - strand, within PGA1_c22370at 2322.748 kb on + strand, within PGA1_c22370at 2322.756 kb on - strandat 2322.758 kb on - strandat 2322.790 kb on + strandat 2322.797 kb on + strandat 2322.806 kb on - strandat 2322.815 kb on + strandat 2322.815 kb on + strandat 2322.815 kb on - strandat 2322.841 kb on + strandat 2322.841 kb on + strandat 2322.858 kb on + strandat 2322.859 kb on - strandat 2322.876 kb on - strandat 2322.932 kb on + strandat 2322.936 kb on - strandat 2322.942 kb on + strandat 2322.950 kb on - strandat 2322.995 kb on + strandat 2323.028 kb on - strandat 2323.107 kb on + strandat 2323.109 kb on - strandat 2323.115 kb on - strandat 2323.146 kb on + strandat 2323.146 kb on + strandat 2323.146 kb on + strandat 2323.146 kb on + strandat 2323.146 kb on + strandat 2323.151 kb on + strandat 2323.154 kb on - strandat 2323.154 kb on - strandat 2323.154 kb on - strandat 2323.156 kb on + strandat 2323.174 kb on + strandat 2323.219 kb on - strandat 2323.289 kb on - strand, within PGA1_c22380at 2323.289 kb on - strand, within PGA1_c22380at 2323.289 kb on - strand, within PGA1_c22380at 2323.298 kb on + strand, within PGA1_c22380at 2323.298 kb on - strand, within PGA1_c22380at 2323.372 kb on + strand, within PGA1_c22380at 2323.380 kb on - strand, within PGA1_c22380at 2323.380 kb on - strand, within PGA1_c22380at 2323.403 kb on + strand, within PGA1_c22380at 2323.404 kb on + strand, within PGA1_c22380at 2323.445 kb on - strand, within PGA1_c22380at 2323.471 kb on + strand, within PGA1_c22380at 2323.471 kb on + strand, within PGA1_c22380at 2323.492 kb on + strand, within PGA1_c22380at 2323.527 kb on + strand, within PGA1_c22380at 2323.535 kb on - strand, within PGA1_c22380at 2323.567 kb on + strand, within PGA1_c22380at 2323.588 kb on - strand, within PGA1_c22380at 2323.650 kb on + strandat 2323.672 kb on + strandat 2323.718 kb on - strand, within PGA1_c22390at 2323.728 kb on + strand, within PGA1_c22390at 2323.773 kb on + strand, within PGA1_c22390at 2323.782 kb on + strand, within PGA1_c22390

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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2,321,459 + PGA1_c22350 0.16 -1.1
2,321,482 + PGA1_c22350 0.21 -0.8
2,321,490 - PGA1_c22350 0.23 -0.1
2,321,508 + PGA1_c22350 0.27 +0.5
2,321,508 + PGA1_c22350 0.27 +0.7
2,321,516 - PGA1_c22350 0.28 +1.2
2,321,516 - PGA1_c22350 0.28 -1.5
2,321,516 - PGA1_c22350 0.28 -0.6
2,321,516 - PGA1_c22350 0.28 -2.7
2,321,516 - PGA1_c22350 0.28 -1.1
2,321,575 - PGA1_c22350 0.41 +0.3
2,321,575 - PGA1_c22350 0.41 -0.8
2,321,630 - PGA1_c22350 0.52 -0.2
2,321,631 - PGA1_c22350 0.53 -1.6
2,321,706 + PGA1_c22350 0.69 -0.1
2,321,716 + PGA1_c22350 0.71 +0.0
2,321,720 + PGA1_c22350 0.72 +0.5
2,321,776 + PGA1_c22350 0.83 +0.5
2,321,784 - PGA1_c22350 0.85 -0.6
2,321,784 - PGA1_c22350 0.85 -0.5
2,321,814 + +1.0
2,321,822 - +0.2
2,321,822 - -0.8
2,321,822 - -0.1
2,321,822 - +0.2
2,321,822 - -0.5
2,321,822 - -0.4
2,321,831 - -0.0
2,321,841 - -0.5
2,321,871 + +0.4
2,321,871 + -0.1
2,321,879 - -0.5
2,321,887 - +0.4
2,321,918 + -0.6
2,321,926 - -0.5
2,322,004 - PGA1_c22360 0.14 +0.0
2,322,023 - PGA1_c22360 0.18 +0.4
2,322,055 + PGA1_c22360 0.26 +0.3
2,322,055 + PGA1_c22360 0.26 -0.7
2,322,055 + PGA1_c22360 0.26 +0.4
2,322,060 + PGA1_c22360 0.27 +0.6
2,322,109 + PGA1_c22360 0.38 +0.2
2,322,117 - PGA1_c22360 0.39 +0.1
2,322,130 + PGA1_c22360 0.42 +0.6
2,322,137 - PGA1_c22360 0.44 +0.2
2,322,138 - PGA1_c22360 0.44 -1.6
2,322,138 - PGA1_c22360 0.44 +0.0
2,322,169 + PGA1_c22360 0.51 +0.0
2,322,177 - PGA1_c22360 0.53 -1.1
2,322,204 + PGA1_c22360 0.59 -0.8
2,322,244 + PGA1_c22360 0.68 +0.8
2,322,252 - PGA1_c22360 0.70 +0.3
2,322,272 - PGA1_c22360 0.74 +0.3
2,322,292 + PGA1_c22360 0.79 -1.0
2,322,363 + +0.3
2,322,363 + +0.1
2,322,363 + -0.4
2,322,363 + +0.2
2,322,363 + +0.1
2,322,363 + -0.2
2,322,363 + -0.5
2,322,363 + -1.6
2,322,363 + +0.0
2,322,363 + +1.8
2,322,363 + -0.3
2,322,363 + +0.4
2,322,363 + +0.8
2,322,363 + +0.2
2,322,363 + -0.6
2,322,363 + -0.9
2,322,363 + +0.7
2,322,363 + -0.0
2,322,365 - -0.2
2,322,371 - +1.1
2,322,371 - -0.3
2,322,371 - -0.4
2,322,371 - -0.9
2,322,371 - -0.5
2,322,371 - -1.8
2,322,371 - -1.8
2,322,371 - +0.6
2,322,371 - +0.6
2,322,371 - +1.2
2,322,371 - +0.1
2,322,371 - +0.5
2,322,371 - +0.7
2,322,390 + -0.6
2,322,407 - -0.3
2,322,431 + +0.3
2,322,437 - +1.0
2,322,459 + -0.4
2,322,464 + +0.5
2,322,503 + PGA1_c22370 0.15 +0.4
2,322,597 + PGA1_c22370 0.43 -0.0
2,322,597 + PGA1_c22370 0.43 +0.6
2,322,597 - PGA1_c22370 0.43 -0.4
2,322,597 - PGA1_c22370 0.43 +0.9
2,322,605 - PGA1_c22370 0.46 +0.5
2,322,605 - PGA1_c22370 0.46 +1.2
2,322,624 - PGA1_c22370 0.51 +0.4
2,322,643 + PGA1_c22370 0.57 +0.0
2,322,643 + PGA1_c22370 0.57 +0.7
2,322,682 + PGA1_c22370 0.68 +0.5
2,322,682 - PGA1_c22370 0.68 -0.0
2,322,748 + PGA1_c22370 0.88 -0.2
2,322,756 - +0.5
2,322,758 - -0.6
2,322,790 + +0.8
2,322,797 + -0.2
2,322,806 - +1.1
2,322,815 + +0.8
2,322,815 + -0.3
2,322,815 - -1.8
2,322,841 + +1.0
2,322,841 + -0.9
2,322,858 + +0.4
2,322,859 - +0.8
2,322,876 - +0.2
2,322,932 + +0.2
2,322,936 - -1.1
2,322,942 + +0.4
2,322,950 - -0.5
2,322,995 + +0.1
2,323,028 - +0.1
2,323,107 + -0.4
2,323,109 - -1.1
2,323,115 - +0.6
2,323,146 + -0.4
2,323,146 + +0.6
2,323,146 + +0.9
2,323,146 + -0.1
2,323,146 + +0.4
2,323,151 + -0.1
2,323,154 - +0.4
2,323,154 - -0.5
2,323,154 - -0.5
2,323,156 + -0.4
2,323,174 + -0.4
2,323,219 - +0.1
2,323,289 - PGA1_c22380 0.22 -1.1
2,323,289 - PGA1_c22380 0.22 -0.5
2,323,289 - PGA1_c22380 0.22 -0.6
2,323,298 + PGA1_c22380 0.24 -0.0
2,323,298 - PGA1_c22380 0.24 -0.8
2,323,372 + PGA1_c22380 0.41 +0.5
2,323,380 - PGA1_c22380 0.42 -0.2
2,323,380 - PGA1_c22380 0.42 +0.1
2,323,403 + PGA1_c22380 0.47 -0.5
2,323,404 + PGA1_c22380 0.48 +0.6
2,323,445 - PGA1_c22380 0.57 +0.4
2,323,471 + PGA1_c22380 0.62 -0.3
2,323,471 + PGA1_c22380 0.62 +1.2
2,323,492 + PGA1_c22380 0.67 -0.4
2,323,527 + PGA1_c22380 0.75 +0.3
2,323,535 - PGA1_c22380 0.76 -0.8
2,323,567 + PGA1_c22380 0.83 +0.2
2,323,588 - PGA1_c22380 0.88 -0.2
2,323,650 + -1.7
2,323,672 + -0.8
2,323,718 - PGA1_c22390 0.17 +0.6
2,323,728 + PGA1_c22390 0.19 -0.4
2,323,773 + PGA1_c22390 0.32 +0.6
2,323,782 + PGA1_c22390 0.34 +0.1

Or see this region's nucleotide sequence