Experiment: m.b. Furfuryl Alcohol 0.064 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c22020 and PGA1_c22030 are separated by 190 nucleotides PGA1_c22030 and PGA1_c22040 are separated by 22 nucleotides
PGA1_c22020: PGA1_c22020 - putative ribosomal large subunit pseudouridine synthase B, at 2,282,036 to 2,283,361
_c22020
PGA1_c22030: PGA1_c22030 - 5-bromo-4-chloroindolyl phosphate hydrolysis protein., at 2,283,552 to 2,284,469
_c22030
PGA1_c22040: PGA1_c22040 - putative toxic anion resistance protein, at 2,284,492 to 2,285,688
_c22040
Position (kb)
2283
2284
2285 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2282.589 kb on + strand, within PGA1_c22020 at 2282.693 kb on - strand, within PGA1_c22020 at 2282.711 kb on - strand, within PGA1_c22020 at 2282.788 kb on + strand, within PGA1_c22020 at 2282.837 kb on + strand, within PGA1_c22020 at 2282.860 kb on + strand, within PGA1_c22020 at 2282.874 kb on - strand, within PGA1_c22020 at 2282.938 kb on + strand, within PGA1_c22020 at 2282.939 kb on + strand, within PGA1_c22020 at 2283.122 kb on + strand, within PGA1_c22020 at 2283.178 kb on - strand, within PGA1_c22020 at 2283.198 kb on + strand, within PGA1_c22020 at 2283.206 kb on - strand, within PGA1_c22020 at 2283.307 kb on + strand at 2283.355 kb on + strand at 2283.355 kb on + strand at 2283.542 kb on + strand at 2283.542 kb on + strand at 2283.550 kb on + strand at 2283.580 kb on + strand at 2283.580 kb on + strand at 2283.588 kb on - strand at 2283.619 kb on + strand at 2283.622 kb on - strand at 2283.658 kb on + strand, within PGA1_c22030 at 2283.675 kb on + strand, within PGA1_c22030 at 2283.705 kb on + strand, within PGA1_c22030 at 2283.813 kb on + strand, within PGA1_c22030 at 2283.893 kb on + strand, within PGA1_c22030 at 2283.901 kb on - strand, within PGA1_c22030 at 2283.901 kb on - strand, within PGA1_c22030 at 2283.956 kb on + strand, within PGA1_c22030 at 2283.956 kb on + strand, within PGA1_c22030 at 2284.106 kb on - strand, within PGA1_c22030 at 2284.149 kb on + strand, within PGA1_c22030 at 2284.181 kb on + strand, within PGA1_c22030 at 2284.210 kb on - strand, within PGA1_c22030 at 2284.226 kb on + strand, within PGA1_c22030 at 2284.284 kb on + strand, within PGA1_c22030 at 2284.352 kb on + strand, within PGA1_c22030 at 2284.406 kb on - strand at 2284.447 kb on - strand at 2284.460 kb on - strand at 2284.460 kb on - strand at 2284.464 kb on + strand at 2284.472 kb on - strand at 2284.509 kb on + strand at 2284.512 kb on - strand at 2284.525 kb on - strand at 2284.553 kb on + strand at 2284.637 kb on - strand, within PGA1_c22040 at 2284.644 kb on + strand, within PGA1_c22040 at 2284.726 kb on - strand, within PGA1_c22040 at 2284.727 kb on - strand, within PGA1_c22040 at 2284.759 kb on + strand, within PGA1_c22040 at 2284.781 kb on - strand, within PGA1_c22040 at 2284.914 kb on + strand, within PGA1_c22040 at 2284.943 kb on + strand, within PGA1_c22040 at 2284.967 kb on - strand, within PGA1_c22040 at 2284.967 kb on - strand, within PGA1_c22040 at 2284.981 kb on + strand, within PGA1_c22040 at 2285.036 kb on - strand, within PGA1_c22040 at 2285.041 kb on + strand, within PGA1_c22040 at 2285.132 kb on - strand, within PGA1_c22040 at 2285.163 kb on - strand, within PGA1_c22040 at 2285.163 kb on - strand, within PGA1_c22040 at 2285.282 kb on + strand, within PGA1_c22040 at 2285.282 kb on + strand, within PGA1_c22040 at 2285.287 kb on + strand, within PGA1_c22040 at 2285.290 kb on - strand, within PGA1_c22040 at 2285.290 kb on - strand, within PGA1_c22040 at 2285.290 kb on - strand, within PGA1_c22040 at 2285.290 kb on - strand, within PGA1_c22040 at 2285.292 kb on + strand, within PGA1_c22040 at 2285.292 kb on + strand, within PGA1_c22040 at 2285.300 kb on - strand, within PGA1_c22040 at 2285.300 kb on - strand, within PGA1_c22040 at 2285.300 kb on - strand, within PGA1_c22040 at 2285.300 kb on - strand, within PGA1_c22040 at 2285.331 kb on + strand, within PGA1_c22040 at 2285.331 kb on + strand, within PGA1_c22040 at 2285.417 kb on + strand, within PGA1_c22040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol% remove 2,282,589 + PGA1_c22020 0.42 +0.4 2,282,693 - PGA1_c22020 0.50 +0.7 2,282,711 - PGA1_c22020 0.51 -0.1 2,282,788 + PGA1_c22020 0.57 -0.9 2,282,837 + PGA1_c22020 0.60 +0.5 2,282,860 + PGA1_c22020 0.62 -0.4 2,282,874 - PGA1_c22020 0.63 -1.3 2,282,938 + PGA1_c22020 0.68 -0.3 2,282,939 + PGA1_c22020 0.68 +1.0 2,283,122 + PGA1_c22020 0.82 -0.6 2,283,178 - PGA1_c22020 0.86 -1.6 2,283,198 + PGA1_c22020 0.88 -0.5 2,283,206 - PGA1_c22020 0.88 -1.8 2,283,307 + -0.7 2,283,355 + +0.7 2,283,355 + +0.3 2,283,542 + +0.3 2,283,542 + -1.3 2,283,550 + -0.0 2,283,580 + -0.9 2,283,580 + +0.8 2,283,588 - -0.4 2,283,619 + +1.1 2,283,622 - +0.4 2,283,658 + PGA1_c22030 0.12 -1.0 2,283,675 + PGA1_c22030 0.13 -0.3 2,283,705 + PGA1_c22030 0.17 -0.4 2,283,813 + PGA1_c22030 0.28 +0.0 2,283,893 + PGA1_c22030 0.37 -0.3 2,283,901 - PGA1_c22030 0.38 -1.1 2,283,901 - PGA1_c22030 0.38 -1.6 2,283,956 + PGA1_c22030 0.44 -0.0 2,283,956 + PGA1_c22030 0.44 -1.4 2,284,106 - PGA1_c22030 0.60 -0.2 2,284,149 + PGA1_c22030 0.65 +0.4 2,284,181 + PGA1_c22030 0.69 +0.4 2,284,210 - PGA1_c22030 0.72 -0.4 2,284,226 + PGA1_c22030 0.73 -1.3 2,284,284 + PGA1_c22030 0.80 -1.0 2,284,352 + PGA1_c22030 0.87 +0.5 2,284,406 - +0.3 2,284,447 - -1.1 2,284,460 - -1.1 2,284,460 - +0.5 2,284,464 + -0.3 2,284,472 - -0.7 2,284,509 + -1.1 2,284,512 - +0.9 2,284,525 - -0.1 2,284,553 + -3.5 2,284,637 - PGA1_c22040 0.12 -0.3 2,284,644 + PGA1_c22040 0.13 +1.0 2,284,726 - PGA1_c22040 0.20 +0.9 2,284,727 - PGA1_c22040 0.20 +0.4 2,284,759 + PGA1_c22040 0.22 +0.6 2,284,781 - PGA1_c22040 0.24 +1.2 2,284,914 + PGA1_c22040 0.35 -1.0 2,284,943 + PGA1_c22040 0.38 +0.2 2,284,967 - PGA1_c22040 0.40 +0.2 2,284,967 - PGA1_c22040 0.40 -0.4 2,284,981 + PGA1_c22040 0.41 -0.7 2,285,036 - PGA1_c22040 0.45 -0.6 2,285,041 + PGA1_c22040 0.46 +1.4 2,285,132 - PGA1_c22040 0.53 -0.4 2,285,163 - PGA1_c22040 0.56 -1.2 2,285,163 - PGA1_c22040 0.56 -0.0 2,285,282 + PGA1_c22040 0.66 -0.3 2,285,282 + PGA1_c22040 0.66 -1.9 2,285,287 + PGA1_c22040 0.66 -1.3 2,285,290 - PGA1_c22040 0.67 +0.7 2,285,290 - PGA1_c22040 0.67 +0.7 2,285,290 - PGA1_c22040 0.67 +0.2 2,285,290 - PGA1_c22040 0.67 +0.4 2,285,292 + PGA1_c22040 0.67 -1.2 2,285,292 + PGA1_c22040 0.67 -0.2 2,285,300 - PGA1_c22040 0.68 +0.5 2,285,300 - PGA1_c22040 0.68 +1.1 2,285,300 - PGA1_c22040 0.68 +0.2 2,285,300 - PGA1_c22040 0.68 -0.3 2,285,331 + PGA1_c22040 0.70 +0.4 2,285,331 + PGA1_c22040 0.70 -0.2 2,285,417 + PGA1_c22040 0.77 -0.6
Or see this region's nucleotide sequence