Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17830

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17820 and PGA1_c17830 are separated by 48 nucleotidesPGA1_c17830 and PGA1_c17840 are separated by 35 nucleotidesPGA1_c17840 and PGA1_c17850 overlap by 8 nucleotides PGA1_c17820: PGA1_c17820 - gene transfer agent major capsid protein, at 1,862,932 to 1,864,116 _c17820 PGA1_c17830: PGA1_c17830 - putative gene transfer agent prohead protease, at 1,864,165 to 1,864,782 _c17830 PGA1_c17840: PGA1_c17840 - hypothetical protein, at 1,864,818 to 1,865,036 _c17840 PGA1_c17850: PGA1_c17850 - putative gene transfer agent portal protein, at 1,865,029 to 1,866,222 _c17850 Position (kb) 1864 1865Strain fitness (log2 ratio) -1 0 1at 1863.251 kb on + strand, within PGA1_c17820at 1863.251 kb on + strand, within PGA1_c17820at 1863.302 kb on + strand, within PGA1_c17820at 1863.451 kb on + strand, within PGA1_c17820at 1863.498 kb on + strand, within PGA1_c17820at 1863.506 kb on - strand, within PGA1_c17820at 1863.551 kb on + strand, within PGA1_c17820at 1863.551 kb on + strand, within PGA1_c17820at 1863.559 kb on - strand, within PGA1_c17820at 1863.654 kb on - strand, within PGA1_c17820at 1863.678 kb on + strand, within PGA1_c17820at 1863.693 kb on + strand, within PGA1_c17820at 1863.734 kb on + strand, within PGA1_c17820at 1863.734 kb on + strand, within PGA1_c17820at 1863.917 kb on - strand, within PGA1_c17820at 1863.964 kb on + strand, within PGA1_c17820at 1863.965 kb on + strand, within PGA1_c17820at 1863.965 kb on + strand, within PGA1_c17820at 1863.965 kb on + strand, within PGA1_c17820at 1863.973 kb on - strand, within PGA1_c17820at 1863.973 kb on - strand, within PGA1_c17820at 1863.973 kb on - strand, within PGA1_c17820at 1863.973 kb on - strand, within PGA1_c17820at 1863.973 kb on - strand, within PGA1_c17820at 1863.973 kb on - strand, within PGA1_c17820at 1864.015 kb on - strandat 1864.083 kb on - strandat 1864.099 kb on + strandat 1864.107 kb on - strandat 1864.161 kb on + strandat 1864.176 kb on - strandat 1864.177 kb on + strandat 1864.210 kb on - strandat 1864.254 kb on - strand, within PGA1_c17830at 1864.283 kb on + strand, within PGA1_c17830at 1864.445 kb on + strand, within PGA1_c17830at 1864.547 kb on + strand, within PGA1_c17830at 1864.611 kb on + strand, within PGA1_c17830at 1864.701 kb on - strand, within PGA1_c17830at 1864.726 kb on + strandat 1864.872 kb on + strand, within PGA1_c17840at 1864.994 kb on + strand, within PGA1_c17840at 1865.198 kb on - strand, within PGA1_c17850at 1865.244 kb on - strand, within PGA1_c17850at 1865.337 kb on + strand, within PGA1_c17850at 1865.345 kb on - strand, within PGA1_c17850at 1865.529 kb on + strand, within PGA1_c17850at 1865.538 kb on - strand, within PGA1_c17850at 1865.538 kb on - strand, within PGA1_c17850at 1865.549 kb on + strand, within PGA1_c17850at 1865.557 kb on - strand, within PGA1_c17850at 1865.557 kb on - strand, within PGA1_c17850at 1865.564 kb on + strand, within PGA1_c17850at 1865.595 kb on + strand, within PGA1_c17850at 1865.603 kb on - strand, within PGA1_c17850at 1865.603 kb on - strand, within PGA1_c17850at 1865.618 kb on - strand, within PGA1_c17850at 1865.682 kb on + strand, within PGA1_c17850at 1865.682 kb on + strand, within PGA1_c17850at 1865.727 kb on + strand, within PGA1_c17850

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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1,863,251 + PGA1_c17820 0.27 -0.1
1,863,251 + PGA1_c17820 0.27 -0.2
1,863,302 + PGA1_c17820 0.31 -1.6
1,863,451 + PGA1_c17820 0.44 -0.2
1,863,498 + PGA1_c17820 0.48 +0.0
1,863,506 - PGA1_c17820 0.48 +1.0
1,863,551 + PGA1_c17820 0.52 +0.2
1,863,551 + PGA1_c17820 0.52 -0.4
1,863,559 - PGA1_c17820 0.53 +0.1
1,863,654 - PGA1_c17820 0.61 -0.4
1,863,678 + PGA1_c17820 0.63 +0.3
1,863,693 + PGA1_c17820 0.64 -0.3
1,863,734 + PGA1_c17820 0.68 -1.0
1,863,734 + PGA1_c17820 0.68 +0.1
1,863,917 - PGA1_c17820 0.83 -0.2
1,863,964 + PGA1_c17820 0.87 +0.8
1,863,965 + PGA1_c17820 0.87 +0.9
1,863,965 + PGA1_c17820 0.87 +0.0
1,863,965 + PGA1_c17820 0.87 +0.5
1,863,973 - PGA1_c17820 0.88 -0.1
1,863,973 - PGA1_c17820 0.88 -0.8
1,863,973 - PGA1_c17820 0.88 -1.4
1,863,973 - PGA1_c17820 0.88 +1.0
1,863,973 - PGA1_c17820 0.88 +0.2
1,863,973 - PGA1_c17820 0.88 +0.3
1,864,015 - +0.6
1,864,083 - -0.1
1,864,099 + +0.3
1,864,107 - +0.8
1,864,161 + -0.2
1,864,176 - +0.2
1,864,177 + -0.0
1,864,210 - +1.1
1,864,254 - PGA1_c17830 0.14 -0.1
1,864,283 + PGA1_c17830 0.19 +1.3
1,864,445 + PGA1_c17830 0.45 +0.6
1,864,547 + PGA1_c17830 0.62 +0.3
1,864,611 + PGA1_c17830 0.72 +0.1
1,864,701 - PGA1_c17830 0.87 +0.1
1,864,726 + -0.8
1,864,872 + PGA1_c17840 0.25 +0.2
1,864,994 + PGA1_c17840 0.80 +0.1
1,865,198 - PGA1_c17850 0.14 -1.2
1,865,244 - PGA1_c17850 0.18 -0.8
1,865,337 + PGA1_c17850 0.26 -0.4
1,865,345 - PGA1_c17850 0.26 -0.5
1,865,529 + PGA1_c17850 0.42 -0.7
1,865,538 - PGA1_c17850 0.43 +1.7
1,865,538 - PGA1_c17850 0.43 +0.1
1,865,549 + PGA1_c17850 0.44 +0.1
1,865,557 - PGA1_c17850 0.44 +1.1
1,865,557 - PGA1_c17850 0.44 +0.6
1,865,564 + PGA1_c17850 0.45 -0.1
1,865,595 + PGA1_c17850 0.47 -0.4
1,865,603 - PGA1_c17850 0.48 -0.3
1,865,603 - PGA1_c17850 0.48 -0.1
1,865,618 - PGA1_c17850 0.49 +0.3
1,865,682 + PGA1_c17850 0.55 -0.7
1,865,682 + PGA1_c17850 0.55 -0.9
1,865,727 + PGA1_c17850 0.58 +0.6

Or see this region's nucleotide sequence