Experiment: m.b. Furfuryl Alcohol 0.064 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17690 and PGA1_c17700 are separated by 292 nucleotides PGA1_c17700 and PGA1_c17710 are separated by 12 nucleotides
PGA1_c17690: PGA1_c17690 - serine acetyltransferase CysE, at 1,852,047 to 1,852,862
_c17690
PGA1_c17700: PGA1_c17700 - hypothetical protein, at 1,853,155 to 1,853,451
_c17700
PGA1_c17710: PGA1_c17710 - putative gene transfer agent protein, at 1,853,464 to 1,857,432
_c17710
Position (kb)
1853
1854 Strain fitness (log2 ratio)
-2
-1
0
1 at 1853.127 kb on + strand at 1853.150 kb on - strand at 1853.215 kb on - strand, within PGA1_c17700 at 1853.215 kb on - strand, within PGA1_c17700 at 1853.215 kb on - strand, within PGA1_c17700 at 1853.249 kb on - strand, within PGA1_c17700 at 1853.300 kb on + strand, within PGA1_c17700 at 1853.313 kb on - strand, within PGA1_c17700 at 1853.436 kb on + strand at 1853.480 kb on - strand at 1853.530 kb on - strand at 1853.541 kb on + strand at 1853.601 kb on - strand at 1853.601 kb on - strand at 1853.624 kb on - strand at 1853.650 kb on + strand at 1853.775 kb on + strand at 1853.777 kb on + strand at 1853.783 kb on - strand at 1853.785 kb on + strand at 1853.817 kb on + strand at 1853.835 kb on - strand at 1853.835 kb on - strand at 1853.855 kb on + strand at 1853.874 kb on + strand, within PGA1_c17710 at 1853.874 kb on + strand at 1853.882 kb on - strand, within PGA1_c17710 at 1853.945 kb on - strand, within PGA1_c17710 at 1853.978 kb on + strand, within PGA1_c17710 at 1853.982 kb on + strand, within PGA1_c17710 at 1853.983 kb on + strand, within PGA1_c17710 at 1854.041 kb on - strand, within PGA1_c17710 at 1854.068 kb on - strand, within PGA1_c17710 at 1854.104 kb on - strand, within PGA1_c17710 at 1854.114 kb on + strand, within PGA1_c17710 at 1854.114 kb on + strand, within PGA1_c17710 at 1854.122 kb on - strand, within PGA1_c17710 at 1854.299 kb on - strand, within PGA1_c17710 at 1854.299 kb on - strand, within PGA1_c17710 at 1854.305 kb on + strand, within PGA1_c17710 at 1854.310 kb on + strand, within PGA1_c17710 at 1854.382 kb on - strand, within PGA1_c17710 at 1854.405 kb on + strand, within PGA1_c17710 at 1854.440 kb on - strand, within PGA1_c17710 at 1854.443 kb on + strand, within PGA1_c17710 at 1854.443 kb on + strand, within PGA1_c17710 at 1854.443 kb on + strand, within PGA1_c17710 at 1854.443 kb on + strand, within PGA1_c17710 at 1854.443 kb on + strand, within PGA1_c17710 at 1854.449 kb on + strand, within PGA1_c17710 at 1854.451 kb on - strand, within PGA1_c17710 at 1854.451 kb on - strand, within PGA1_c17710
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol% remove 1,853,127 + +0.9 1,853,150 - -0.1 1,853,215 - PGA1_c17700 0.20 -0.2 1,853,215 - PGA1_c17700 0.20 +0.8 1,853,215 - PGA1_c17700 0.20 +0.0 1,853,249 - PGA1_c17700 0.32 +0.8 1,853,300 + PGA1_c17700 0.49 +0.1 1,853,313 - PGA1_c17700 0.53 +0.2 1,853,436 + -1.2 1,853,480 - -0.5 1,853,530 - -0.1 1,853,541 + +0.5 1,853,601 - -0.2 1,853,601 - +0.1 1,853,624 - -0.6 1,853,650 + +0.6 1,853,775 + -0.5 1,853,777 + +0.5 1,853,783 - +0.0 1,853,785 + +0.4 1,853,817 + +0.2 1,853,835 - +0.9 1,853,835 - -0.4 1,853,855 + -0.5 1,853,874 + PGA1_c17710 0.10 -0.3 1,853,874 + +0.1 1,853,882 - PGA1_c17710 0.11 -0.4 1,853,945 - PGA1_c17710 0.12 +0.8 1,853,978 + PGA1_c17710 0.13 +1.1 1,853,982 + PGA1_c17710 0.13 +0.2 1,853,983 + PGA1_c17710 0.13 -0.5 1,854,041 - PGA1_c17710 0.15 -1.8 1,854,068 - PGA1_c17710 0.15 -0.1 1,854,104 - PGA1_c17710 0.16 -0.4 1,854,114 + PGA1_c17710 0.16 +0.1 1,854,114 + PGA1_c17710 0.16 +0.0 1,854,122 - PGA1_c17710 0.17 +0.7 1,854,299 - PGA1_c17710 0.21 +0.1 1,854,299 - PGA1_c17710 0.21 -0.9 1,854,305 + PGA1_c17710 0.21 +0.2 1,854,310 + PGA1_c17710 0.21 +0.3 1,854,382 - PGA1_c17710 0.23 +0.3 1,854,405 + PGA1_c17710 0.24 -0.3 1,854,440 - PGA1_c17710 0.25 +0.1 1,854,443 + PGA1_c17710 0.25 +0.8 1,854,443 + PGA1_c17710 0.25 -1.0 1,854,443 + PGA1_c17710 0.25 -0.7 1,854,443 + PGA1_c17710 0.25 +0.4 1,854,443 + PGA1_c17710 0.25 -2.0 1,854,449 + PGA1_c17710 0.25 +0.5 1,854,451 - PGA1_c17710 0.25 +0.3 1,854,451 - PGA1_c17710 0.25 +0.2
Or see this region's nucleotide sequence