Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14960

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14950 and PGA1_c14960 are separated by 65 nucleotidesPGA1_c14960 and PGA1_c14970 are separated by 153 nucleotidesPGA1_c14970 and PGA1_c14980 are separated by 136 nucleotides PGA1_c14950: PGA1_c14950 - putative long-chain-fatty-acid-CoA ligase, at 1,554,361 to 1,555,968 _c14950 PGA1_c14960: PGA1_c14960 - putative transcriptional regulator, at 1,556,034 to 1,556,657 _c14960 PGA1_c14970: PGA1_c14970 - hypothetical protein, at 1,556,811 to 1,557,041 _c14970 PGA1_c14980: PGA1_c14980 - putative major intrinsic protein, at 1,557,178 to 1,557,834 _c14980 Position (kb) 1556 1557Strain fitness (log2 ratio) -2 -1 0 1at 1555.085 kb on + strand, within PGA1_c14950at 1555.182 kb on - strand, within PGA1_c14950at 1555.276 kb on - strand, within PGA1_c14950at 1555.281 kb on - strand, within PGA1_c14950at 1555.309 kb on + strand, within PGA1_c14950at 1555.309 kb on + strand, within PGA1_c14950at 1555.345 kb on + strand, within PGA1_c14950at 1555.363 kb on + strand, within PGA1_c14950at 1555.516 kb on - strand, within PGA1_c14950at 1555.559 kb on + strand, within PGA1_c14950at 1555.559 kb on + strand, within PGA1_c14950at 1555.579 kb on - strand, within PGA1_c14950at 1555.587 kb on + strand, within PGA1_c14950at 1555.602 kb on + strand, within PGA1_c14950at 1555.605 kb on + strand, within PGA1_c14950at 1555.605 kb on + strand, within PGA1_c14950at 1555.613 kb on - strand, within PGA1_c14950at 1555.629 kb on + strand, within PGA1_c14950at 1555.695 kb on - strand, within PGA1_c14950at 1555.747 kb on - strand, within PGA1_c14950at 1555.780 kb on - strand, within PGA1_c14950at 1555.780 kb on - strand, within PGA1_c14950at 1555.831 kb on - strandat 1555.923 kb on + strandat 1555.923 kb on + strandat 1555.923 kb on + strandat 1555.961 kb on + strandat 1556.222 kb on + strand, within PGA1_c14960at 1556.233 kb on + strand, within PGA1_c14960at 1556.249 kb on - strand, within PGA1_c14960at 1556.320 kb on - strand, within PGA1_c14960at 1556.341 kb on - strand, within PGA1_c14960at 1556.351 kb on - strand, within PGA1_c14960at 1556.355 kb on + strand, within PGA1_c14960at 1556.357 kb on - strand, within PGA1_c14960at 1556.522 kb on + strand, within PGA1_c14960at 1556.666 kb on - strandat 1556.704 kb on + strandat 1556.744 kb on + strandat 1556.753 kb on + strandat 1556.761 kb on + strandat 1556.761 kb on + strandat 1556.761 kb on + strandat 1556.761 kb on + strandat 1556.761 kb on + strandat 1556.769 kb on - strandat 1556.769 kb on - strandat 1556.769 kb on - strandat 1556.769 kb on - strandat 1556.769 kb on - strandat 1556.804 kb on + strandat 1556.804 kb on + strandat 1556.804 kb on + strandat 1556.809 kb on + strandat 1556.812 kb on - strandat 1556.812 kb on - strandat 1556.812 kb on - strandat 1556.851 kb on + strand, within PGA1_c14970at 1556.859 kb on - strand, within PGA1_c14970at 1556.859 kb on - strand, within PGA1_c14970at 1557.037 kb on + strandat 1557.037 kb on + strandat 1557.037 kb on + strandat 1557.043 kb on + strandat 1557.045 kb on - strandat 1557.045 kb on - strandat 1557.164 kb on + strandat 1557.172 kb on - strandat 1557.172 kb on - strandat 1557.172 kb on - strandat 1557.219 kb on + strandat 1557.235 kb on - strandat 1557.255 kb on + strand, within PGA1_c14980at 1557.258 kb on - strand, within PGA1_c14980at 1557.263 kb on - strand, within PGA1_c14980at 1557.266 kb on + strand, within PGA1_c14980at 1557.274 kb on - strand, within PGA1_c14980at 1557.274 kb on - strand, within PGA1_c14980at 1557.274 kb on - strand, within PGA1_c14980at 1557.274 kb on - strand, within PGA1_c14980at 1557.353 kb on - strand, within PGA1_c14980at 1557.387 kb on - strand, within PGA1_c14980at 1557.387 kb on - strand, within PGA1_c14980at 1557.395 kb on + strand, within PGA1_c14980at 1557.395 kb on + strand, within PGA1_c14980at 1557.480 kb on + strand, within PGA1_c14980at 1557.489 kb on - strand, within PGA1_c14980at 1557.569 kb on + strand, within PGA1_c14980at 1557.569 kb on + strand, within PGA1_c14980at 1557.577 kb on - strand, within PGA1_c14980at 1557.598 kb on - strand, within PGA1_c14980at 1557.619 kb on + strand, within PGA1_c14980at 1557.637 kb on + strand, within PGA1_c14980

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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1,555,085 + PGA1_c14950 0.45 -0.2
1,555,182 - PGA1_c14950 0.51 -0.9
1,555,276 - PGA1_c14950 0.57 +1.1
1,555,281 - PGA1_c14950 0.57 +0.3
1,555,309 + PGA1_c14950 0.59 +1.0
1,555,309 + PGA1_c14950 0.59 -0.3
1,555,345 + PGA1_c14950 0.61 -0.2
1,555,363 + PGA1_c14950 0.62 -0.7
1,555,516 - PGA1_c14950 0.72 +0.4
1,555,559 + PGA1_c14950 0.75 -0.5
1,555,559 + PGA1_c14950 0.75 -0.9
1,555,579 - PGA1_c14950 0.76 +0.6
1,555,587 + PGA1_c14950 0.76 +0.8
1,555,602 + PGA1_c14950 0.77 +0.6
1,555,605 + PGA1_c14950 0.77 +1.1
1,555,605 + PGA1_c14950 0.77 +1.0
1,555,613 - PGA1_c14950 0.78 -1.4
1,555,629 + PGA1_c14950 0.79 -0.9
1,555,695 - PGA1_c14950 0.83 +0.3
1,555,747 - PGA1_c14950 0.86 +0.0
1,555,780 - PGA1_c14950 0.88 -2.3
1,555,780 - PGA1_c14950 0.88 -0.6
1,555,831 - +0.4
1,555,923 + +0.5
1,555,923 + -0.6
1,555,923 + -0.3
1,555,961 + -0.3
1,556,222 + PGA1_c14960 0.30 +0.1
1,556,233 + PGA1_c14960 0.32 +1.0
1,556,249 - PGA1_c14960 0.34 +1.1
1,556,320 - PGA1_c14960 0.46 -0.1
1,556,341 - PGA1_c14960 0.49 -0.3
1,556,351 - PGA1_c14960 0.51 +0.6
1,556,355 + PGA1_c14960 0.51 +0.3
1,556,357 - PGA1_c14960 0.52 +0.8
1,556,522 + PGA1_c14960 0.78 +0.5
1,556,666 - +0.1
1,556,704 + -0.8
1,556,744 + +0.1
1,556,753 + +0.3
1,556,761 + -0.2
1,556,761 + +0.6
1,556,761 + -0.9
1,556,761 + -1.4
1,556,761 + -0.3
1,556,769 - -0.2
1,556,769 - +0.6
1,556,769 - -1.0
1,556,769 - -0.3
1,556,769 - -0.0
1,556,804 + +0.2
1,556,804 + +0.6
1,556,804 + -0.3
1,556,809 + +1.0
1,556,812 - +0.4
1,556,812 - -0.3
1,556,812 - +0.3
1,556,851 + PGA1_c14970 0.17 +0.3
1,556,859 - PGA1_c14970 0.21 -0.5
1,556,859 - PGA1_c14970 0.21 -0.4
1,557,037 + +0.4
1,557,037 + +0.4
1,557,037 + +0.1
1,557,043 + -0.3
1,557,045 - -0.1
1,557,045 - +0.7
1,557,164 + -0.2
1,557,172 - -0.4
1,557,172 - +0.7
1,557,172 - +0.1
1,557,219 + +0.8
1,557,235 - -0.2
1,557,255 + PGA1_c14980 0.12 +0.3
1,557,258 - PGA1_c14980 0.12 +0.7
1,557,263 - PGA1_c14980 0.13 -0.1
1,557,266 + PGA1_c14980 0.13 +0.2
1,557,274 - PGA1_c14980 0.15 +1.2
1,557,274 - PGA1_c14980 0.15 +0.3
1,557,274 - PGA1_c14980 0.15 +0.2
1,557,274 - PGA1_c14980 0.15 -0.7
1,557,353 - PGA1_c14980 0.27 +0.1
1,557,387 - PGA1_c14980 0.32 +0.2
1,557,387 - PGA1_c14980 0.32 -0.1
1,557,395 + PGA1_c14980 0.33 +0.9
1,557,395 + PGA1_c14980 0.33 +0.1
1,557,480 + PGA1_c14980 0.46 -0.1
1,557,489 - PGA1_c14980 0.47 +0.2
1,557,569 + PGA1_c14980 0.60 -0.2
1,557,569 + PGA1_c14980 0.60 -0.9
1,557,577 - PGA1_c14980 0.61 +0.2
1,557,598 - PGA1_c14980 0.64 -1.0
1,557,619 + PGA1_c14980 0.67 +0.4
1,557,637 + PGA1_c14980 0.70 -0.5

Or see this region's nucleotide sequence