Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01280

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01260 and PGA1_c01270 are separated by 3 nucleotidesPGA1_c01270 and PGA1_c01280 are separated by 67 nucleotidesPGA1_c01280 and PGA1_c01290 are separated by 33 nucleotides PGA1_c01260: PGA1_c01260 - putative cobalamin adenosyltransferase, at 118,019 to 118,591 _c01260 PGA1_c01270: PGA1_c01270 - Hypoxia induced protein conserved region., at 118,595 to 118,801 _c01270 PGA1_c01280: PGA1_c01280 - short-chain dehydrogenase/reductase, at 118,869 to 119,699 _c01280 PGA1_c01290: PGA1_c01290 - Bacterial SH3 domain., at 119,733 to 120,434 _c01290 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 117.872 kb on + strandat 117.909 kb on - strandat 118.072 kb on - strandat 118.237 kb on + strand, within PGA1_c01260at 118.347 kb on + strand, within PGA1_c01260at 118.367 kb on + strand, within PGA1_c01260at 118.508 kb on + strand, within PGA1_c01260at 118.594 kb on - strandat 118.602 kb on + strandat 118.618 kb on + strand, within PGA1_c01270at 118.618 kb on + strand, within PGA1_c01270at 118.634 kb on + strand, within PGA1_c01270at 118.634 kb on + strand, within PGA1_c01270at 118.642 kb on - strand, within PGA1_c01270at 118.642 kb on - strand, within PGA1_c01270at 118.642 kb on - strand, within PGA1_c01270at 118.721 kb on + strand, within PGA1_c01270at 118.829 kb on + strandat 118.949 kb on - strandat 118.949 kb on - strandat 119.004 kb on + strand, within PGA1_c01280at 119.012 kb on - strand, within PGA1_c01280at 119.017 kb on + strand, within PGA1_c01280at 119.027 kb on - strand, within PGA1_c01280at 119.041 kb on + strand, within PGA1_c01280at 119.062 kb on - strand, within PGA1_c01280at 119.202 kb on + strand, within PGA1_c01280at 119.224 kb on + strand, within PGA1_c01280at 119.232 kb on - strand, within PGA1_c01280at 119.267 kb on + strand, within PGA1_c01280at 119.329 kb on - strand, within PGA1_c01280at 119.348 kb on + strand, within PGA1_c01280at 119.361 kb on + strand, within PGA1_c01280at 119.361 kb on + strand, within PGA1_c01280at 119.432 kb on - strand, within PGA1_c01280at 119.466 kb on - strand, within PGA1_c01280at 119.493 kb on + strand, within PGA1_c01280at 119.493 kb on + strand, within PGA1_c01280at 119.532 kb on - strand, within PGA1_c01280at 119.535 kb on + strand, within PGA1_c01280at 119.543 kb on - strand, within PGA1_c01280at 119.564 kb on - strand, within PGA1_c01280at 119.602 kb on - strand, within PGA1_c01280at 119.625 kb on - strandat 119.642 kb on + strandat 119.667 kb on + strandat 119.692 kb on - strandat 119.717 kb on + strandat 119.725 kb on - strandat 119.786 kb on + strandat 119.786 kb on + strandat 119.794 kb on - strandat 119.794 kb on - strandat 119.801 kb on + strandat 119.801 kb on + strandat 119.842 kb on + strand, within PGA1_c01290at 119.856 kb on - strand, within PGA1_c01290at 119.891 kb on - strand, within PGA1_c01290at 119.982 kb on + strand, within PGA1_c01290at 119.990 kb on - strand, within PGA1_c01290at 119.990 kb on - strand, within PGA1_c01290at 119.990 kb on - strand, within PGA1_c01290at 119.990 kb on - strand, within PGA1_c01290at 120.100 kb on - strand, within PGA1_c01290at 120.102 kb on - strand, within PGA1_c01290at 120.105 kb on + strand, within PGA1_c01290at 120.110 kb on + strand, within PGA1_c01290at 120.110 kb on + strand, within PGA1_c01290at 120.113 kb on - strand, within PGA1_c01290at 120.113 kb on - strand, within PGA1_c01290at 120.113 kb on - strand, within PGA1_c01290at 120.113 kb on - strand, within PGA1_c01290at 120.113 kb on - strand, within PGA1_c01290at 120.113 kb on - strand, within PGA1_c01290at 120.113 kb on - strand, within PGA1_c01290at 120.113 kb on - strand, within PGA1_c01290at 120.113 kb on - strand, within PGA1_c01290at 120.113 kb on - strand, within PGA1_c01290at 120.118 kb on - strand, within PGA1_c01290at 120.166 kb on - strand, within PGA1_c01290at 120.192 kb on - strand, within PGA1_c01290at 120.204 kb on + strand, within PGA1_c01290at 120.216 kb on - strand, within PGA1_c01290at 120.216 kb on - strand, within PGA1_c01290at 120.216 kb on - strand, within PGA1_c01290at 120.243 kb on + strand, within PGA1_c01290at 120.264 kb on - strand, within PGA1_c01290at 120.271 kb on - strand, within PGA1_c01290at 120.271 kb on - strand, within PGA1_c01290at 120.306 kb on + strand, within PGA1_c01290at 120.314 kb on - strand, within PGA1_c01290at 120.332 kb on - strand, within PGA1_c01290at 120.391 kb on + strandat 120.491 kb on + strandat 120.518 kb on + strandat 120.519 kb on + strandat 120.568 kb on - strandat 120.573 kb on + strandat 120.583 kb on + strandat 120.586 kb on - strandat 120.586 kb on - strandat 120.586 kb on - strandat 120.586 kb on - strandat 120.629 kb on - strandat 120.648 kb on + strandat 120.655 kb on - strandat 120.656 kb on - strandat 120.656 kb on - strandat 120.677 kb on + strandat 120.683 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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117,872 + +1.2
117,909 - +0.4
118,072 - +0.7
118,237 + PGA1_c01260 0.38 -0.4
118,347 + PGA1_c01260 0.57 +0.8
118,367 + PGA1_c01260 0.61 +0.4
118,508 + PGA1_c01260 0.85 +0.0
118,594 - +0.3
118,602 + -0.6
118,618 + PGA1_c01270 0.11 +1.5
118,618 + PGA1_c01270 0.11 +0.4
118,634 + PGA1_c01270 0.19 -0.2
118,634 + PGA1_c01270 0.19 -0.7
118,642 - PGA1_c01270 0.23 -2.9
118,642 - PGA1_c01270 0.23 -0.2
118,642 - PGA1_c01270 0.23 +0.2
118,721 + PGA1_c01270 0.61 +1.8
118,829 + -0.4
118,949 - +0.9
118,949 - +0.4
119,004 + PGA1_c01280 0.16 -0.5
119,012 - PGA1_c01280 0.17 -1.2
119,017 + PGA1_c01280 0.18 +0.3
119,027 - PGA1_c01280 0.19 -0.2
119,041 + PGA1_c01280 0.21 -1.8
119,062 - PGA1_c01280 0.23 -1.9
119,202 + PGA1_c01280 0.40 -0.3
119,224 + PGA1_c01280 0.43 -0.6
119,232 - PGA1_c01280 0.44 -0.2
119,267 + PGA1_c01280 0.48 +0.7
119,329 - PGA1_c01280 0.55 +0.4
119,348 + PGA1_c01280 0.58 -0.8
119,361 + PGA1_c01280 0.59 -0.0
119,361 + PGA1_c01280 0.59 -0.2
119,432 - PGA1_c01280 0.68 -0.7
119,466 - PGA1_c01280 0.72 +0.8
119,493 + PGA1_c01280 0.75 -0.4
119,493 + PGA1_c01280 0.75 -0.3
119,532 - PGA1_c01280 0.80 -0.3
119,535 + PGA1_c01280 0.80 -0.6
119,543 - PGA1_c01280 0.81 -0.3
119,564 - PGA1_c01280 0.84 -1.3
119,602 - PGA1_c01280 0.88 +0.7
119,625 - -0.2
119,642 + -1.7
119,667 + -0.0
119,692 - +0.7
119,717 + -0.1
119,725 - -1.3
119,786 + -0.1
119,786 + -2.5
119,794 - +0.3
119,794 - -1.0
119,801 + +0.7
119,801 + +0.3
119,842 + PGA1_c01290 0.16 +1.1
119,856 - PGA1_c01290 0.18 -0.8
119,891 - PGA1_c01290 0.23 -0.7
119,982 + PGA1_c01290 0.35 +0.1
119,990 - PGA1_c01290 0.37 -0.2
119,990 - PGA1_c01290 0.37 -0.4
119,990 - PGA1_c01290 0.37 +1.6
119,990 - PGA1_c01290 0.37 +0.0
120,100 - PGA1_c01290 0.52 +0.8
120,102 - PGA1_c01290 0.53 -1.4
120,105 + PGA1_c01290 0.53 +0.3
120,110 + PGA1_c01290 0.54 -0.5
120,110 + PGA1_c01290 0.54 -0.7
120,113 - PGA1_c01290 0.54 +1.7
120,113 - PGA1_c01290 0.54 +0.3
120,113 - PGA1_c01290 0.54 -0.7
120,113 - PGA1_c01290 0.54 +0.9
120,113 - PGA1_c01290 0.54 +0.9
120,113 - PGA1_c01290 0.54 +0.2
120,113 - PGA1_c01290 0.54 +0.7
120,113 - PGA1_c01290 0.54 +0.4
120,113 - PGA1_c01290 0.54 -0.9
120,113 - PGA1_c01290 0.54 +0.5
120,118 - PGA1_c01290 0.55 +0.3
120,166 - PGA1_c01290 0.62 -1.0
120,192 - PGA1_c01290 0.65 -0.5
120,204 + PGA1_c01290 0.67 -0.0
120,216 - PGA1_c01290 0.69 -0.1
120,216 - PGA1_c01290 0.69 -0.1
120,216 - PGA1_c01290 0.69 -1.4
120,243 + PGA1_c01290 0.73 +0.2
120,264 - PGA1_c01290 0.76 +0.5
120,271 - PGA1_c01290 0.77 +0.3
120,271 - PGA1_c01290 0.77 -0.7
120,306 + PGA1_c01290 0.82 +0.6
120,314 - PGA1_c01290 0.83 +0.1
120,332 - PGA1_c01290 0.85 -0.1
120,391 + -0.1
120,491 + -0.2
120,518 + +0.1
120,519 + -0.4
120,568 - +0.3
120,573 + -0.1
120,583 + +0.2
120,586 - +0.0
120,586 - -0.0
120,586 - +0.1
120,586 - +0.2
120,629 - -2.1
120,648 + -0.4
120,655 - +0.1
120,656 - +0.1
120,656 - +0.4
120,677 + +0.9
120,683 + +0.4

Or see this region's nucleotide sequence