Experiment: m.b. Furfuryl Alcohol 0.064 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c12350 and PGA1_c12360 are separated by 81 nucleotides PGA1_c12360 and PGA1_c12370 are separated by 103 nucleotides PGA1_c12370 and PGA1_c12380 are separated by 88 nucleotides PGA1_c12380 and PGA1_c12390 are separated by 19 nucleotides
PGA1_c12350: PGA1_c12350 - acetolactate synthase, catabolic, at 1,284,241 to 1,285,905
_c12350
PGA1_c12360: PGA1_c12360 - Uncharacterized conserved protein, at 1,285,987 to 1,286,526
_c12360
PGA1_c12370: PGA1_c12370 - YeeE/YedE family (DUF395)., at 1,286,630 to 1,287,700
_c12370
PGA1_c12380: PGA1_c12380 - regulatory protein SoxR, at 1,287,789 to 1,288,124
_c12380
PGA1_c12390: PGA1_c12390 - putative protein SoxS, at 1,288,144 to 1,288,611
_c12390
Position (kb)
1286
1287
1288 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1285.631 kb on - strand, within PGA1_c12350 at 1285.647 kb on + strand, within PGA1_c12350 at 1285.695 kb on - strand, within PGA1_c12350 at 1285.767 kb on - strand at 1285.856 kb on - strand at 1285.864 kb on - strand at 1285.916 kb on - strand at 1285.916 kb on - strand at 1285.926 kb on - strand at 1285.976 kb on - strand at 1285.984 kb on + strand at 1285.984 kb on + strand at 1286.001 kb on + strand at 1286.016 kb on - strand at 1286.029 kb on + strand at 1286.045 kb on + strand, within PGA1_c12360 at 1286.061 kb on + strand, within PGA1_c12360 at 1286.061 kb on + strand, within PGA1_c12360 at 1286.066 kb on + strand, within PGA1_c12360 at 1286.072 kb on + strand, within PGA1_c12360 at 1286.074 kb on - strand, within PGA1_c12360 at 1286.084 kb on - strand, within PGA1_c12360 at 1286.084 kb on - strand, within PGA1_c12360 at 1286.095 kb on + strand, within PGA1_c12360 at 1286.161 kb on + strand, within PGA1_c12360 at 1286.218 kb on - strand, within PGA1_c12360 at 1286.219 kb on + strand, within PGA1_c12360 at 1286.227 kb on - strand, within PGA1_c12360 at 1286.281 kb on + strand, within PGA1_c12360 at 1286.289 kb on - strand, within PGA1_c12360 at 1286.354 kb on + strand, within PGA1_c12360 at 1286.354 kb on + strand, within PGA1_c12360 at 1286.362 kb on - strand, within PGA1_c12360 at 1286.384 kb on - strand, within PGA1_c12360 at 1286.441 kb on - strand, within PGA1_c12360 at 1286.524 kb on - strand at 1286.525 kb on + strand at 1286.538 kb on + strand at 1286.554 kb on + strand at 1286.554 kb on + strand at 1286.610 kb on + strand at 1286.627 kb on + strand at 1286.668 kb on + strand at 1286.757 kb on + strand, within PGA1_c12370 at 1286.757 kb on - strand, within PGA1_c12370 at 1286.830 kb on + strand, within PGA1_c12370 at 1286.874 kb on + strand, within PGA1_c12370 at 1286.961 kb on - strand, within PGA1_c12370 at 1286.966 kb on + strand, within PGA1_c12370 at 1286.966 kb on + strand, within PGA1_c12370 at 1286.966 kb on + strand, within PGA1_c12370 at 1286.974 kb on - strand, within PGA1_c12370 at 1286.974 kb on - strand, within PGA1_c12370 at 1287.040 kb on - strand, within PGA1_c12370 at 1287.083 kb on + strand, within PGA1_c12370 at 1287.158 kb on + strand, within PGA1_c12370 at 1287.291 kb on + strand, within PGA1_c12370 at 1287.303 kb on + strand, within PGA1_c12370 at 1287.316 kb on - strand, within PGA1_c12370 at 1287.334 kb on + strand, within PGA1_c12370 at 1287.341 kb on + strand, within PGA1_c12370 at 1287.462 kb on - strand, within PGA1_c12370 at 1287.474 kb on + strand, within PGA1_c12370 at 1287.479 kb on + strand, within PGA1_c12370 at 1287.479 kb on + strand, within PGA1_c12370 at 1287.479 kb on + strand, within PGA1_c12370 at 1287.487 kb on - strand, within PGA1_c12370 at 1287.487 kb on - strand, within PGA1_c12370 at 1287.493 kb on + strand, within PGA1_c12370 at 1287.533 kb on - strand, within PGA1_c12370 at 1287.550 kb on + strand, within PGA1_c12370 at 1287.561 kb on + strand, within PGA1_c12370 at 1287.569 kb on - strand, within PGA1_c12370 at 1287.641 kb on - strand at 1287.641 kb on - strand at 1287.652 kb on - strand at 1287.669 kb on + strand at 1287.669 kb on + strand at 1287.698 kb on + strand at 1287.698 kb on + strand at 1287.753 kb on - strand at 1287.773 kb on - strand at 1287.868 kb on + strand, within PGA1_c12380 at 1287.886 kb on + strand, within PGA1_c12380 at 1287.891 kb on + strand, within PGA1_c12380 at 1287.899 kb on - strand, within PGA1_c12380 at 1287.941 kb on + strand, within PGA1_c12380 at 1288.019 kb on + strand, within PGA1_c12380 at 1288.027 kb on - strand, within PGA1_c12380 at 1288.027 kb on - strand, within PGA1_c12380 at 1288.027 kb on - strand, within PGA1_c12380 at 1288.027 kb on - strand, within PGA1_c12380 at 1288.065 kb on + strand, within PGA1_c12380 at 1288.139 kb on - strand at 1288.139 kb on - strand at 1288.176 kb on + strand at 1288.176 kb on + strand at 1288.230 kb on + strand, within PGA1_c12390 at 1288.271 kb on - strand, within PGA1_c12390 at 1288.281 kb on - strand, within PGA1_c12390 at 1288.599 kb on - strand at 1288.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol% remove 1,285,631 - PGA1_c12350 0.83 -0.4 1,285,647 + PGA1_c12350 0.84 -0.1 1,285,695 - PGA1_c12350 0.87 +0.3 1,285,767 - +0.7 1,285,856 - -0.9 1,285,864 - -0.9 1,285,916 - -0.5 1,285,916 - -0.3 1,285,926 - -0.6 1,285,976 - +1.5 1,285,984 + +1.0 1,285,984 + +0.9 1,286,001 + -0.7 1,286,016 - -0.5 1,286,029 + -0.5 1,286,045 + PGA1_c12360 0.11 -0.7 1,286,061 + PGA1_c12360 0.14 -0.5 1,286,061 + PGA1_c12360 0.14 +0.0 1,286,066 + PGA1_c12360 0.15 -0.5 1,286,072 + PGA1_c12360 0.16 +0.2 1,286,074 - PGA1_c12360 0.16 +0.1 1,286,084 - PGA1_c12360 0.18 -0.3 1,286,084 - PGA1_c12360 0.18 +0.7 1,286,095 + PGA1_c12360 0.20 -1.2 1,286,161 + PGA1_c12360 0.32 +0.5 1,286,218 - PGA1_c12360 0.43 +1.2 1,286,219 + PGA1_c12360 0.43 -0.5 1,286,227 - PGA1_c12360 0.44 -0.5 1,286,281 + PGA1_c12360 0.54 -1.8 1,286,289 - PGA1_c12360 0.56 -0.4 1,286,354 + PGA1_c12360 0.68 +0.0 1,286,354 + PGA1_c12360 0.68 -1.7 1,286,362 - PGA1_c12360 0.69 +0.9 1,286,384 - PGA1_c12360 0.74 +0.1 1,286,441 - PGA1_c12360 0.84 +0.1 1,286,524 - -0.4 1,286,525 + -1.6 1,286,538 + +0.2 1,286,554 + -0.3 1,286,554 + +1.0 1,286,610 + -0.3 1,286,627 + -0.2 1,286,668 + +0.9 1,286,757 + PGA1_c12370 0.12 -0.9 1,286,757 - PGA1_c12370 0.12 -0.1 1,286,830 + PGA1_c12370 0.19 +0.5 1,286,874 + PGA1_c12370 0.23 -0.1 1,286,961 - PGA1_c12370 0.31 +1.4 1,286,966 + PGA1_c12370 0.31 -0.2 1,286,966 + PGA1_c12370 0.31 +0.6 1,286,966 + PGA1_c12370 0.31 +0.5 1,286,974 - PGA1_c12370 0.32 +1.2 1,286,974 - PGA1_c12370 0.32 +1.0 1,287,040 - PGA1_c12370 0.38 +0.7 1,287,083 + PGA1_c12370 0.42 +0.3 1,287,158 + PGA1_c12370 0.49 -0.0 1,287,291 + PGA1_c12370 0.62 -0.1 1,287,303 + PGA1_c12370 0.63 +2.0 1,287,316 - PGA1_c12370 0.64 +1.1 1,287,334 + PGA1_c12370 0.66 -0.2 1,287,341 + PGA1_c12370 0.66 +1.3 1,287,462 - PGA1_c12370 0.78 +0.8 1,287,474 + PGA1_c12370 0.79 +1.3 1,287,479 + PGA1_c12370 0.79 -0.8 1,287,479 + PGA1_c12370 0.79 -2.6 1,287,479 + PGA1_c12370 0.79 +0.5 1,287,487 - PGA1_c12370 0.80 -0.7 1,287,487 - PGA1_c12370 0.80 +0.2 1,287,493 + PGA1_c12370 0.81 -0.8 1,287,533 - PGA1_c12370 0.84 +0.4 1,287,550 + PGA1_c12370 0.86 +0.4 1,287,561 + PGA1_c12370 0.87 -0.3 1,287,569 - PGA1_c12370 0.88 +0.2 1,287,641 - -0.0 1,287,641 - -3.1 1,287,652 - -0.1 1,287,669 + -1.0 1,287,669 + -0.6 1,287,698 + -0.8 1,287,698 + -0.2 1,287,753 - -0.7 1,287,773 - -1.8 1,287,868 + PGA1_c12380 0.24 -1.8 1,287,886 + PGA1_c12380 0.29 -0.1 1,287,891 + PGA1_c12380 0.30 +0.3 1,287,899 - PGA1_c12380 0.33 +1.7 1,287,941 + PGA1_c12380 0.45 -0.4 1,288,019 + PGA1_c12380 0.68 -0.1 1,288,027 - PGA1_c12380 0.71 +0.0 1,288,027 - PGA1_c12380 0.71 -0.9 1,288,027 - PGA1_c12380 0.71 +0.8 1,288,027 - PGA1_c12380 0.71 -0.3 1,288,065 + PGA1_c12380 0.82 -1.0 1,288,139 - +0.5 1,288,139 - -0.4 1,288,176 + -0.8 1,288,176 + +1.9 1,288,230 + PGA1_c12390 0.18 +1.6 1,288,271 - PGA1_c12390 0.27 -0.1 1,288,281 - PGA1_c12390 0.29 +0.7 1,288,599 - -0.0 1,288,607 - -2.4
Or see this region's nucleotide sequence