Experiment: m.b. Furfuryl Alcohol 0.064 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01140 and PGA1_c01150 are separated by 347 nucleotides PGA1_c01150 and PGA1_c01160 are separated by 33 nucleotides
PGA1_c01140: PGA1_c01140 - phosphoenolpyruvate carboxykinase, at 106,635 to 108,233
_c01140
PGA1_c01150: PGA1_c01150 - transcriptional regulatory protein ChvI, at 108,581 to 109,282
_c01150
PGA1_c01160: PGA1_c01160 - sensor protein ChvG, at 109,316 to 111,028
_c01160
Position (kb) 108
109
110 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 107.721 kb on + strand, within PGA1_c01140 at 107.757 kb on + strand, within PGA1_c01140 at 107.811 kb on + strand, within PGA1_c01140 at 107.814 kb on - strand, within PGA1_c01140 at 107.819 kb on - strand, within PGA1_c01140 at 107.839 kb on + strand, within PGA1_c01140 at 107.839 kb on + strand, within PGA1_c01140 at 107.847 kb on - strand, within PGA1_c01140 at 107.914 kb on + strand, within PGA1_c01140 at 107.930 kb on + strand, within PGA1_c01140 at 107.930 kb on + strand, within PGA1_c01140 at 107.960 kb on + strand, within PGA1_c01140 at 107.982 kb on - strand, within PGA1_c01140 at 108.052 kb on - strand, within PGA1_c01140 at 108.120 kb on + strand at 108.128 kb on - strand at 108.128 kb on - strand at 108.153 kb on - strand at 108.179 kb on - strand at 108.194 kb on - strand at 108.256 kb on + strand at 108.256 kb on - strand at 108.265 kb on - strand at 108.324 kb on + strand at 108.338 kb on + strand at 108.350 kb on + strand at 108.350 kb on + strand at 108.350 kb on + strand at 108.350 kb on + strand at 108.350 kb on + strand at 108.350 kb on + strand at 108.350 kb on + strand at 108.358 kb on - strand at 108.358 kb on - strand at 108.358 kb on - strand at 108.358 kb on - strand at 108.360 kb on + strand at 108.360 kb on + strand at 108.360 kb on + strand at 108.368 kb on - strand at 108.368 kb on - strand at 108.368 kb on - strand at 108.479 kb on + strand at 108.480 kb on + strand at 108.488 kb on - strand at 108.498 kb on - strand at 108.527 kb on + strand at 108.548 kb on - strand at 108.564 kb on + strand at 108.564 kb on + strand at 108.564 kb on + strand at 108.564 kb on + strand at 108.567 kb on - strand at 108.572 kb on - strand at 108.572 kb on - strand at 108.572 kb on - strand at 108.572 kb on - strand at 108.572 kb on - strand at 108.575 kb on + strand at 108.583 kb on - strand at 108.583 kb on - strand at 108.583 kb on - strand at 108.583 kb on - strand at 108.601 kb on - strand at 108.616 kb on - strand at 108.639 kb on + strand at 108.639 kb on + strand at 108.639 kb on + strand at 108.639 kb on + strand at 108.639 kb on - strand at 108.641 kb on - strand at 108.647 kb on + strand at 108.647 kb on - strand at 108.647 kb on - strand at 108.647 kb on - strand at 108.647 kb on - strand at 108.647 kb on - strand at 108.647 kb on - strand at 108.654 kb on - strand, within PGA1_c01150 at 108.654 kb on - strand, within PGA1_c01150 at 108.655 kb on - strand, within PGA1_c01150 at 108.655 kb on - strand, within PGA1_c01150 at 108.662 kb on + strand, within PGA1_c01150 at 108.662 kb on - strand, within PGA1_c01150 at 108.662 kb on - strand, within PGA1_c01150 at 108.678 kb on - strand, within PGA1_c01150 at 108.689 kb on + strand, within PGA1_c01150 at 108.689 kb on + strand, within PGA1_c01150 at 108.726 kb on - strand, within PGA1_c01150 at 108.759 kb on + strand, within PGA1_c01150 at 108.759 kb on + strand, within PGA1_c01150 at 108.767 kb on - strand, within PGA1_c01150 at 108.767 kb on - strand, within PGA1_c01150 at 108.767 kb on - strand, within PGA1_c01150 at 108.767 kb on - strand, within PGA1_c01150 at 108.825 kb on - strand, within PGA1_c01150 at 108.842 kb on + strand, within PGA1_c01150 at 108.842 kb on + strand, within PGA1_c01150 at 108.850 kb on - strand, within PGA1_c01150 at 108.853 kb on + strand, within PGA1_c01150 at 108.853 kb on + strand, within PGA1_c01150 at 108.853 kb on + strand, within PGA1_c01150 at 108.861 kb on - strand, within PGA1_c01150 at 108.864 kb on - strand, within PGA1_c01150 at 108.871 kb on - strand, within PGA1_c01150 at 108.906 kb on - strand, within PGA1_c01150 at 108.906 kb on - strand, within PGA1_c01150 at 108.921 kb on - strand, within PGA1_c01150 at 109.032 kb on + strand, within PGA1_c01150 at 109.032 kb on + strand, within PGA1_c01150 at 109.032 kb on + strand, within PGA1_c01150 at 109.032 kb on + strand, within PGA1_c01150 at 109.040 kb on - strand, within PGA1_c01150 at 109.040 kb on - strand, within PGA1_c01150 at 109.040 kb on - strand, within PGA1_c01150 at 109.048 kb on - strand, within PGA1_c01150 at 109.049 kb on - strand, within PGA1_c01150 at 109.090 kb on + strand, within PGA1_c01150 at 109.124 kb on - strand, within PGA1_c01150 at 109.124 kb on - strand, within PGA1_c01150 at 109.148 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.153 kb on + strand, within PGA1_c01150 at 109.156 kb on - strand, within PGA1_c01150 at 109.156 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.161 kb on - strand, within PGA1_c01150 at 109.166 kb on - strand, within PGA1_c01150 at 109.166 kb on - strand, within PGA1_c01150 at 109.173 kb on + strand, within PGA1_c01150 at 109.194 kb on - strand, within PGA1_c01150 at 109.256 kb on + strand at 109.289 kb on + strand at 109.291 kb on - strand at 109.303 kb on + strand at 109.343 kb on - strand at 109.343 kb on - strand at 109.361 kb on + strand at 109.361 kb on + strand at 109.380 kb on - strand at 109.383 kb on + strand at 109.401 kb on + strand at 109.409 kb on - strand at 109.409 kb on - strand at 109.414 kb on + strand at 109.466 kb on + strand at 109.478 kb on + strand at 109.479 kb on + strand at 109.479 kb on - strand at 109.483 kb on + strand at 109.487 kb on - strand at 109.498 kb on + strand, within PGA1_c01160 at 109.498 kb on + strand, within PGA1_c01160 at 109.553 kb on - strand, within PGA1_c01160 at 109.553 kb on - strand, within PGA1_c01160 at 109.593 kb on + strand, within PGA1_c01160 at 109.701 kb on + strand, within PGA1_c01160 at 109.704 kb on - strand, within PGA1_c01160 at 109.709 kb on - strand, within PGA1_c01160 at 109.709 kb on - strand, within PGA1_c01160 at 109.734 kb on - strand, within PGA1_c01160 at 109.747 kb on + strand, within PGA1_c01160 at 109.747 kb on + strand, within PGA1_c01160 at 109.747 kb on + strand, within PGA1_c01160 at 109.747 kb on + strand, within PGA1_c01160 at 109.747 kb on + strand, within PGA1_c01160 at 109.747 kb on + strand, within PGA1_c01160 at 109.747 kb on + strand, within PGA1_c01160 at 109.747 kb on + strand, within PGA1_c01160 at 109.747 kb on + strand, within PGA1_c01160 at 109.747 kb on + strand, within PGA1_c01160 at 109.747 kb on + strand, within PGA1_c01160 at 109.755 kb on - strand, within PGA1_c01160 at 109.755 kb on - strand, within PGA1_c01160 at 109.755 kb on - strand, within PGA1_c01160 at 109.755 kb on - strand, within PGA1_c01160 at 109.755 kb on - strand, within PGA1_c01160 at 109.755 kb on - strand, within PGA1_c01160 at 109.755 kb on - strand, within PGA1_c01160 at 109.755 kb on - strand, within PGA1_c01160 at 109.755 kb on - strand, within PGA1_c01160 at 109.775 kb on - strand, within PGA1_c01160 at 109.821 kb on - strand, within PGA1_c01160 at 109.842 kb on - strand, within PGA1_c01160 at 109.879 kb on + strand, within PGA1_c01160 at 109.880 kb on - strand, within PGA1_c01160 at 109.922 kb on - strand, within PGA1_c01160 at 109.927 kb on + strand, within PGA1_c01160 at 110.020 kb on + strand, within PGA1_c01160 at 110.036 kb on + strand, within PGA1_c01160 at 110.039 kb on - strand, within PGA1_c01160 at 110.041 kb on + strand, within PGA1_c01160 at 110.041 kb on + strand, within PGA1_c01160 at 110.103 kb on + strand, within PGA1_c01160 at 110.132 kb on + strand, within PGA1_c01160 at 110.138 kb on + strand, within PGA1_c01160 at 110.140 kb on - strand, within PGA1_c01160 at 110.141 kb on - strand, within PGA1_c01160 at 110.144 kb on + strand, within PGA1_c01160 at 110.152 kb on - strand, within PGA1_c01160 at 110.177 kb on + strand, within PGA1_c01160 at 110.200 kb on + strand, within PGA1_c01160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol% remove 107,721 + PGA1_c01140 0.68 +0.5 107,757 + PGA1_c01140 0.70 -1.8 107,811 + PGA1_c01140 0.74 +0.5 107,814 - PGA1_c01140 0.74 -0.9 107,819 - PGA1_c01140 0.74 +0.5 107,839 + PGA1_c01140 0.75 +0.8 107,839 + PGA1_c01140 0.75 +0.8 107,847 - PGA1_c01140 0.76 +0.0 107,914 + PGA1_c01140 0.80 +0.8 107,930 + PGA1_c01140 0.81 -0.4 107,930 + PGA1_c01140 0.81 +0.1 107,960 + PGA1_c01140 0.83 -0.4 107,982 - PGA1_c01140 0.84 -0.4 108,052 - PGA1_c01140 0.89 -0.2 108,120 + +0.3 108,128 - +1.0 108,128 - -0.2 108,153 - +0.5 108,179 - -0.4 108,194 - +0.5 108,256 + -0.3 108,256 - +0.6 108,265 - +0.2 108,324 + -0.5 108,338 + -1.4 108,350 + +0.2 108,350 + +0.0 108,350 + -0.2 108,350 + +0.7 108,350 + +0.6 108,350 + +0.5 108,350 + +1.4 108,358 - +0.3 108,358 - +0.6 108,358 - -0.3 108,358 - -0.1 108,360 + +0.7 108,360 + -0.2 108,360 + +0.9 108,368 - +1.2 108,368 - +0.4 108,368 - -0.0 108,479 + -0.8 108,480 + -1.8 108,488 - +1.6 108,498 - +0.0 108,527 + +0.6 108,548 - +1.1 108,564 + +0.4 108,564 + +1.3 108,564 + +1.0 108,564 + -0.6 108,567 - +0.7 108,572 - +0.6 108,572 - +0.1 108,572 - +1.3 108,572 - +0.8 108,572 - +0.8 108,575 + +1.0 108,583 - +0.9 108,583 - -0.9 108,583 - +0.3 108,583 - +1.3 108,601 - +1.0 108,616 - -0.2 108,639 + +0.4 108,639 + +0.1 108,639 + +2.1 108,639 + +1.7 108,639 - -0.4 108,641 - -0.5 108,647 + +0.4 108,647 - -0.2 108,647 - -0.9 108,647 - +0.4 108,647 - +0.8 108,647 - +1.1 108,647 - +0.5 108,654 - PGA1_c01150 0.10 +1.0 108,654 - PGA1_c01150 0.10 +0.1 108,655 - PGA1_c01150 0.11 +0.6 108,655 - PGA1_c01150 0.11 +0.3 108,662 + PGA1_c01150 0.12 +1.1 108,662 - PGA1_c01150 0.12 -0.0 108,662 - PGA1_c01150 0.12 +0.1 108,678 - PGA1_c01150 0.14 +0.2 108,689 + PGA1_c01150 0.15 -1.2 108,689 + PGA1_c01150 0.15 -0.3 108,726 - PGA1_c01150 0.21 +0.5 108,759 + PGA1_c01150 0.25 +0.6 108,759 + PGA1_c01150 0.25 +0.6 108,767 - PGA1_c01150 0.26 +0.5 108,767 - PGA1_c01150 0.26 +0.5 108,767 - PGA1_c01150 0.26 +0.3 108,767 - PGA1_c01150 0.26 -0.2 108,825 - PGA1_c01150 0.35 +0.6 108,842 + PGA1_c01150 0.37 +1.9 108,842 + PGA1_c01150 0.37 +1.1 108,850 - PGA1_c01150 0.38 -1.7 108,853 + PGA1_c01150 0.39 +0.4 108,853 + PGA1_c01150 0.39 +0.2 108,853 + PGA1_c01150 0.39 +0.7 108,861 - PGA1_c01150 0.40 -1.6 108,864 - PGA1_c01150 0.40 +1.1 108,871 - PGA1_c01150 0.41 +1.0 108,906 - PGA1_c01150 0.46 +0.9 108,906 - PGA1_c01150 0.46 +0.9 108,921 - PGA1_c01150 0.48 -1.7 109,032 + PGA1_c01150 0.64 -0.8 109,032 + PGA1_c01150 0.64 -1.0 109,032 + PGA1_c01150 0.64 +2.0 109,032 + PGA1_c01150 0.64 +1.8 109,040 - PGA1_c01150 0.65 +0.6 109,040 - PGA1_c01150 0.65 +0.2 109,040 - PGA1_c01150 0.65 +0.4 109,048 - PGA1_c01150 0.67 +0.5 109,049 - PGA1_c01150 0.67 +0.1 109,090 + PGA1_c01150 0.73 +1.1 109,124 - PGA1_c01150 0.77 -0.9 109,124 - PGA1_c01150 0.77 +0.2 109,148 + PGA1_c01150 0.81 +0.4 109,153 + PGA1_c01150 0.81 +0.4 109,153 + PGA1_c01150 0.81 -1.3 109,153 + PGA1_c01150 0.81 +1.0 109,153 + PGA1_c01150 0.81 -0.3 109,153 + PGA1_c01150 0.81 +0.6 109,153 + PGA1_c01150 0.81 +0.3 109,153 + PGA1_c01150 0.81 -0.6 109,153 + PGA1_c01150 0.81 +0.7 109,153 + PGA1_c01150 0.81 -0.1 109,153 + PGA1_c01150 0.81 +0.4 109,153 + PGA1_c01150 0.81 -0.2 109,153 + PGA1_c01150 0.81 -1.6 109,156 - PGA1_c01150 0.82 +2.5 109,156 - PGA1_c01150 0.82 +0.3 109,161 - PGA1_c01150 0.83 +1.1 109,161 - PGA1_c01150 0.83 -1.4 109,161 - PGA1_c01150 0.83 +0.2 109,161 - PGA1_c01150 0.83 +0.9 109,161 - PGA1_c01150 0.83 +0.8 109,161 - PGA1_c01150 0.83 +0.8 109,161 - PGA1_c01150 0.83 +0.1 109,161 - PGA1_c01150 0.83 +1.6 109,161 - PGA1_c01150 0.83 +0.4 109,161 - PGA1_c01150 0.83 +0.2 109,161 - PGA1_c01150 0.83 +1.2 109,161 - PGA1_c01150 0.83 +0.9 109,161 - PGA1_c01150 0.83 +0.0 109,161 - PGA1_c01150 0.83 +0.6 109,166 - PGA1_c01150 0.83 +1.4 109,166 - PGA1_c01150 0.83 +0.4 109,173 + PGA1_c01150 0.84 -0.7 109,194 - PGA1_c01150 0.87 -1.1 109,256 + -0.2 109,289 + +0.1 109,291 - +0.1 109,303 + +0.0 109,343 - +0.4 109,343 - +0.3 109,361 + +0.2 109,361 + +0.1 109,380 - +0.5 109,383 + -1.0 109,401 + +0.4 109,409 - +1.3 109,409 - -0.3 109,414 + -0.6 109,466 + +0.8 109,478 + +1.0 109,479 + +1.0 109,479 - -0.2 109,483 + -0.9 109,487 - +1.5 109,498 + PGA1_c01160 0.11 -0.3 109,498 + PGA1_c01160 0.11 -0.0 109,553 - PGA1_c01160 0.14 +0.3 109,553 - PGA1_c01160 0.14 -0.3 109,593 + PGA1_c01160 0.16 -0.0 109,701 + PGA1_c01160 0.22 -0.2 109,704 - PGA1_c01160 0.23 -1.6 109,709 - PGA1_c01160 0.23 +1.7 109,709 - PGA1_c01160 0.23 +0.1 109,734 - PGA1_c01160 0.24 +0.2 109,747 + PGA1_c01160 0.25 -0.1 109,747 + PGA1_c01160 0.25 +0.2 109,747 + PGA1_c01160 0.25 -1.0 109,747 + PGA1_c01160 0.25 +0.1 109,747 + PGA1_c01160 0.25 +1.1 109,747 + PGA1_c01160 0.25 +0.7 109,747 + PGA1_c01160 0.25 +0.0 109,747 + PGA1_c01160 0.25 +1.6 109,747 + PGA1_c01160 0.25 -0.7 109,747 + PGA1_c01160 0.25 +1.3 109,747 + PGA1_c01160 0.25 -0.1 109,755 - PGA1_c01160 0.26 +0.3 109,755 - PGA1_c01160 0.26 -0.9 109,755 - PGA1_c01160 0.26 -3.7 109,755 - PGA1_c01160 0.26 +0.2 109,755 - PGA1_c01160 0.26 +1.7 109,755 - PGA1_c01160 0.26 +1.3 109,755 - PGA1_c01160 0.26 +0.9 109,755 - PGA1_c01160 0.26 -0.4 109,755 - PGA1_c01160 0.26 +1.0 109,775 - PGA1_c01160 0.27 -1.2 109,821 - PGA1_c01160 0.29 -0.0 109,842 - PGA1_c01160 0.31 -0.0 109,879 + PGA1_c01160 0.33 +0.0 109,880 - PGA1_c01160 0.33 -0.7 109,922 - PGA1_c01160 0.35 -0.1 109,927 + PGA1_c01160 0.36 -0.6 110,020 + PGA1_c01160 0.41 +1.1 110,036 + PGA1_c01160 0.42 +0.4 110,039 - PGA1_c01160 0.42 +0.7 110,041 + PGA1_c01160 0.42 -0.4 110,041 + PGA1_c01160 0.42 +0.6 110,103 + PGA1_c01160 0.46 +0.3 110,132 + PGA1_c01160 0.48 +1.1 110,138 + PGA1_c01160 0.48 +0.3 110,140 - PGA1_c01160 0.48 +0.6 110,141 - PGA1_c01160 0.48 +0.6 110,144 + PGA1_c01160 0.48 +1.4 110,152 - PGA1_c01160 0.49 -1.4 110,177 + PGA1_c01160 0.50 +0.5 110,200 + PGA1_c01160 0.52 +0.8
Or see this region's nucleotide sequence