Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10670

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10660 and PGA1_c10670 are separated by 144 nucleotidesPGA1_c10670 and PGA1_c10680 are separated by 9 nucleotidesPGA1_c10680 and PGA1_c10690 are separated by 76 nucleotides PGA1_c10660: PGA1_c10660 - DNA alkylation repair enzyme, at 1,103,992 to 1,105,122 _c10660 PGA1_c10670: PGA1_c10670 - putative putrescine transport ATP-binding protein, at 1,105,267 to 1,106,394 _c10670 PGA1_c10680: PGA1_c10680 - helix-turn-helix domain-containing protein, at 1,106,404 to 1,107,093 _c10680 PGA1_c10690: PGA1_c10690 - hypothetical protein, at 1,107,170 to 1,107,478 _c10690 Position (kb) 1105 1106 1107Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1104.423 kb on - strand, within PGA1_c10660at 1104.428 kb on + strand, within PGA1_c10660at 1104.530 kb on + strand, within PGA1_c10660at 1104.543 kb on - strand, within PGA1_c10660at 1104.569 kb on - strand, within PGA1_c10660at 1104.569 kb on - strand, within PGA1_c10660at 1104.569 kb on - strand, within PGA1_c10660at 1104.571 kb on + strand, within PGA1_c10660at 1104.617 kb on - strand, within PGA1_c10660at 1104.640 kb on - strand, within PGA1_c10660at 1104.713 kb on + strand, within PGA1_c10660at 1104.713 kb on + strand, within PGA1_c10660at 1104.713 kb on + strand, within PGA1_c10660at 1104.721 kb on - strand, within PGA1_c10660at 1104.969 kb on - strand, within PGA1_c10660at 1104.969 kb on - strand, within PGA1_c10660at 1104.969 kb on - strand, within PGA1_c10660at 1105.010 kb on - strandat 1105.030 kb on - strandat 1105.049 kb on + strandat 1105.133 kb on + strandat 1105.152 kb on + strandat 1105.217 kb on + strandat 1105.250 kb on - strandat 1105.259 kb on - strandat 1105.288 kb on - strandat 1105.293 kb on - strandat 1105.462 kb on - strand, within PGA1_c10670at 1105.597 kb on + strand, within PGA1_c10670at 1105.691 kb on - strand, within PGA1_c10670at 1105.750 kb on + strand, within PGA1_c10670at 1105.898 kb on - strand, within PGA1_c10670at 1105.903 kb on - strand, within PGA1_c10670at 1105.917 kb on + strand, within PGA1_c10670at 1105.917 kb on + strand, within PGA1_c10670at 1105.960 kb on + strand, within PGA1_c10670at 1106.204 kb on + strand, within PGA1_c10670at 1106.223 kb on + strand, within PGA1_c10670at 1106.345 kb on + strandat 1106.443 kb on - strandat 1106.556 kb on - strand, within PGA1_c10680at 1106.558 kb on + strand, within PGA1_c10680at 1106.566 kb on - strand, within PGA1_c10680at 1106.566 kb on - strand, within PGA1_c10680at 1106.566 kb on - strand, within PGA1_c10680at 1106.676 kb on + strand, within PGA1_c10680at 1106.716 kb on + strand, within PGA1_c10680at 1106.716 kb on + strand, within PGA1_c10680at 1106.786 kb on + strand, within PGA1_c10680at 1106.916 kb on + strand, within PGA1_c10680at 1106.924 kb on - strand, within PGA1_c10680at 1106.924 kb on - strand, within PGA1_c10680at 1106.947 kb on - strand, within PGA1_c10680at 1107.062 kb on - strandat 1107.083 kb on + strandat 1107.095 kb on + strandat 1107.096 kb on - strandat 1107.100 kb on + strandat 1107.100 kb on + strandat 1107.103 kb on - strandat 1107.115 kb on + strandat 1107.123 kb on + strandat 1107.131 kb on - strandat 1107.131 kb on - strandat 1107.162 kb on + strandat 1107.247 kb on - strand, within PGA1_c10690at 1107.302 kb on + strand, within PGA1_c10690

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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1,104,423 - PGA1_c10660 0.38 +0.7
1,104,428 + PGA1_c10660 0.39 +0.6
1,104,530 + PGA1_c10660 0.48 +0.1
1,104,543 - PGA1_c10660 0.49 -1.8
1,104,569 - PGA1_c10660 0.51 +0.2
1,104,569 - PGA1_c10660 0.51 +0.1
1,104,569 - PGA1_c10660 0.51 +0.2
1,104,571 + PGA1_c10660 0.51 +0.4
1,104,617 - PGA1_c10660 0.55 -2.5
1,104,640 - PGA1_c10660 0.57 -0.9
1,104,713 + PGA1_c10660 0.64 -0.4
1,104,713 + PGA1_c10660 0.64 +0.5
1,104,713 + PGA1_c10660 0.64 +0.5
1,104,721 - PGA1_c10660 0.64 +0.3
1,104,969 - PGA1_c10660 0.86 -0.3
1,104,969 - PGA1_c10660 0.86 +1.6
1,104,969 - PGA1_c10660 0.86 -0.2
1,105,010 - -1.0
1,105,030 - -1.1
1,105,049 + -0.4
1,105,133 + -0.6
1,105,152 + -0.1
1,105,217 + -0.6
1,105,250 - +0.4
1,105,259 - +1.1
1,105,288 - -0.2
1,105,293 - -0.5
1,105,462 - PGA1_c10670 0.17 +0.6
1,105,597 + PGA1_c10670 0.29 +1.5
1,105,691 - PGA1_c10670 0.38 +0.2
1,105,750 + PGA1_c10670 0.43 +0.5
1,105,898 - PGA1_c10670 0.56 +0.9
1,105,903 - PGA1_c10670 0.56 -0.3
1,105,917 + PGA1_c10670 0.58 +0.0
1,105,917 + PGA1_c10670 0.58 -0.2
1,105,960 + PGA1_c10670 0.61 -0.8
1,106,204 + PGA1_c10670 0.83 +0.5
1,106,223 + PGA1_c10670 0.85 +0.5
1,106,345 + +0.1
1,106,443 - +1.4
1,106,556 - PGA1_c10680 0.22 -0.8
1,106,558 + PGA1_c10680 0.22 -0.4
1,106,566 - PGA1_c10680 0.23 -0.4
1,106,566 - PGA1_c10680 0.23 +0.1
1,106,566 - PGA1_c10680 0.23 -0.2
1,106,676 + PGA1_c10680 0.39 -0.5
1,106,716 + PGA1_c10680 0.45 +0.3
1,106,716 + PGA1_c10680 0.45 -0.5
1,106,786 + PGA1_c10680 0.55 -2.0
1,106,916 + PGA1_c10680 0.74 +0.1
1,106,924 - PGA1_c10680 0.75 +0.7
1,106,924 - PGA1_c10680 0.75 -0.1
1,106,947 - PGA1_c10680 0.79 -0.7
1,107,062 - +0.3
1,107,083 + +0.4
1,107,095 + +1.8
1,107,096 - -4.0
1,107,100 + -0.3
1,107,100 + +0.3
1,107,103 - -0.8
1,107,115 + -1.0
1,107,123 + -0.2
1,107,131 - -0.3
1,107,131 - -0.6
1,107,162 + +1.1
1,107,247 - PGA1_c10690 0.25 -0.5
1,107,302 + PGA1_c10690 0.43 +0.0

Or see this region's nucleotide sequence