Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08880

Experiment: LB, pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08875 and BWI76_RS08880 overlap by 4 nucleotidesBWI76_RS08880 and BWI76_RS08885 overlap by 4 nucleotidesBWI76_RS08885 and BWI76_RS08890 are separated by 71 nucleotides BWI76_RS08875: BWI76_RS08875 - multidrug ABC transporter ATP-binding protein, at 1,867,984 to 1,869,723 _RS08875 BWI76_RS08880: BWI76_RS08880 - secretion protein HlyD, at 1,869,720 to 1,870,712 _RS08880 BWI76_RS08885: BWI76_RS08885 - transcriptional regulator, at 1,870,709 to 1,871,386 _RS08885 BWI76_RS08890: BWI76_RS08890 - LysR family transcriptional regulator, at 1,871,458 to 1,872,381 _RS08890 Position (kb) 1869 1870 1871Strain fitness (log2 ratio) -1 0 1at 1869.068 kb on + strand, within BWI76_RS08875at 1869.107 kb on + strand, within BWI76_RS08875at 1869.140 kb on - strand, within BWI76_RS08875at 1869.269 kb on + strand, within BWI76_RS08875at 1869.400 kb on + strand, within BWI76_RS08875at 1869.443 kb on + strand, within BWI76_RS08875at 1869.475 kb on + strand, within BWI76_RS08875at 1869.536 kb on - strand, within BWI76_RS08875at 1869.901 kb on + strand, within BWI76_RS08880at 1870.125 kb on - strand, within BWI76_RS08880at 1870.211 kb on + strand, within BWI76_RS08880at 1870.218 kb on - strand, within BWI76_RS08880at 1870.349 kb on - strand, within BWI76_RS08880at 1870.413 kb on + strand, within BWI76_RS08880at 1870.610 kb on - strand, within BWI76_RS08880at 1870.685 kb on + strandat 1870.722 kb on - strandat 1870.960 kb on - strand, within BWI76_RS08885at 1870.960 kb on - strand, within BWI76_RS08885at 1871.089 kb on + strand, within BWI76_RS08885at 1871.272 kb on - strand, within BWI76_RS08885at 1871.297 kb on - strand, within BWI76_RS08885at 1871.431 kb on + strandat 1871.431 kb on + strandat 1871.431 kb on + strandat 1871.439 kb on - strandat 1871.439 kb on - strandat 1871.568 kb on - strand, within BWI76_RS08890at 1871.587 kb on + strand, within BWI76_RS08890at 1871.593 kb on - strand, within BWI76_RS08890at 1871.597 kb on + strand, within BWI76_RS08890at 1871.597 kb on + strandat 1871.605 kb on - strand, within BWI76_RS08890

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH9
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1,869,068 + BWI76_RS08875 0.62 -0.4
1,869,107 + BWI76_RS08875 0.65 +0.6
1,869,140 - BWI76_RS08875 0.66 +0.0
1,869,269 + BWI76_RS08875 0.74 -0.4
1,869,400 + BWI76_RS08875 0.81 -0.2
1,869,443 + BWI76_RS08875 0.84 +0.3
1,869,475 + BWI76_RS08875 0.86 +0.5
1,869,536 - BWI76_RS08875 0.89 -0.7
1,869,901 + BWI76_RS08880 0.18 +0.4
1,870,125 - BWI76_RS08880 0.41 +1.2
1,870,211 + BWI76_RS08880 0.49 +0.1
1,870,218 - BWI76_RS08880 0.50 -0.0
1,870,349 - BWI76_RS08880 0.63 -0.2
1,870,413 + BWI76_RS08880 0.70 +0.3
1,870,610 - BWI76_RS08880 0.90 +0.8
1,870,685 + +1.2
1,870,722 - -0.9
1,870,960 - BWI76_RS08885 0.37 +0.1
1,870,960 - BWI76_RS08885 0.37 +0.4
1,871,089 + BWI76_RS08885 0.56 -0.7
1,871,272 - BWI76_RS08885 0.83 +0.1
1,871,297 - BWI76_RS08885 0.87 -0.8
1,871,431 + -1.2
1,871,431 + +0.6
1,871,431 + -0.3
1,871,439 - +0.4
1,871,439 - -0.1
1,871,568 - BWI76_RS08890 0.12 -1.2
1,871,587 + BWI76_RS08890 0.14 +1.0
1,871,593 - BWI76_RS08890 0.15 +1.1
1,871,597 + BWI76_RS08890 0.15 -0.4
1,871,597 + +0.9
1,871,605 - BWI76_RS08890 0.16 -0.4

Or see this region's nucleotide sequence