Experiment: LB, pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04315 and BWI76_RS04320 are separated by 53 nucleotides BWI76_RS04320 and BWI76_RS04325 are separated by 110 nucleotides BWI76_RS04325 and BWI76_RS04330 are separated by 119 nucleotides BWI76_RS04330 and BWI76_RS04335 overlap by 24 nucleotides
BWI76_RS04315: BWI76_RS04315 - Na+/H+ antiporter NhaA, at 889,232 to 890,407
_RS04315
BWI76_RS04320: BWI76_RS04320 - transcriptional activator NhaR, at 890,461 to 891,360
_RS04320
BWI76_RS04325: BWI76_RS04325 - 30S ribosomal protein S20, at 891,471 to 891,734
_RS04325
BWI76_RS04330: BWI76_RS04330 - hypothetical protein, at 891,854 to 892,088
_RS04330
BWI76_RS04335: BWI76_RS04335 - bifunctional riboflavin kinase/FMN adenylyltransferase, at 892,065 to 893,003
_RS04335
Position (kb) 890
891
892 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 889.466 kb on - strand, within BWI76_RS04315 at 889.508 kb on - strand, within BWI76_RS04315 at 889.508 kb on - strand, within BWI76_RS04315 at 889.603 kb on + strand, within BWI76_RS04315 at 889.655 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.758 kb on - strand, within BWI76_RS04315 at 889.813 kb on + strand, within BWI76_RS04315 at 889.851 kb on + strand, within BWI76_RS04315 at 889.851 kb on + strand, within BWI76_RS04315 at 889.866 kb on + strand, within BWI76_RS04315 at 889.874 kb on - strand, within BWI76_RS04315 at 890.085 kb on + strand, within BWI76_RS04315 at 890.139 kb on - strand, within BWI76_RS04315 at 890.189 kb on + strand, within BWI76_RS04315 at 890.220 kb on - strand, within BWI76_RS04315 at 890.286 kb on + strand, within BWI76_RS04315 at 890.292 kb on + strand at 890.395 kb on - strand at 890.467 kb on - strand at 890.544 kb on + strand at 890.624 kb on + strand, within BWI76_RS04320 at 890.880 kb on + strand, within BWI76_RS04320 at 890.914 kb on + strand, within BWI76_RS04320 at 891.025 kb on - strand, within BWI76_RS04320 at 891.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH9 remove 889,466 - BWI76_RS04315 0.20 -1.8 889,508 - BWI76_RS04315 0.23 -2.4 889,508 - BWI76_RS04315 0.23 -0.9 889,603 + BWI76_RS04315 0.32 -0.4 889,655 + BWI76_RS04315 0.36 -1.7 889,750 + BWI76_RS04315 0.44 -2.1 889,750 + BWI76_RS04315 0.44 -2.7 889,750 + BWI76_RS04315 0.44 -1.1 889,750 + BWI76_RS04315 0.44 -2.0 889,758 - BWI76_RS04315 0.45 -1.3 889,813 + BWI76_RS04315 0.49 -1.0 889,851 + BWI76_RS04315 0.53 -3.5 889,851 + BWI76_RS04315 0.53 -3.0 889,866 + BWI76_RS04315 0.54 -4.0 889,874 - BWI76_RS04315 0.55 -0.8 890,085 + BWI76_RS04315 0.73 -1.2 890,139 - BWI76_RS04315 0.77 -1.7 890,189 + BWI76_RS04315 0.81 -1.5 890,220 - BWI76_RS04315 0.84 -1.7 890,286 + BWI76_RS04315 0.90 -2.7 890,292 + -2.5 890,395 - -1.1 890,467 - -0.5 890,544 + +0.3 890,624 + BWI76_RS04320 0.18 -1.4 890,880 + BWI76_RS04320 0.47 +0.2 890,914 + BWI76_RS04320 0.50 +0.2 891,025 - BWI76_RS04320 0.63 -0.3 891,371 + -0.5
Or see this region's nucleotide sequence