Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0373

Experiment: Pyruvate-Sulfate (60-15mM) with Fluorophosphate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0372 and DVU0373 are separated by 57 nucleotidesDVU0373 and DVU0374 are separated by 204 nucleotides DVU0372: DVU0372 - membrane protein, putative (TIGR), at 420,136 to 420,828 DVU0372 DVU0373: DVU0373 - CoA-binding domain protein (TIGR), at 420,886 to 423,198 DVU0373 DVU0374: DVU0374 - pyruvate ferredoxin/flavodoxin oxidoreductase family protein (TIGR), at 423,403 to 425,901 DVU0374 Position (kb) 420 421 422 423 424Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 419.935 kb on + strandat 419.945 kb on + strandat 419.950 kb on - strandat 419.952 kb on + strandat 419.953 kb on - strandat 419.953 kb on - strandat 420.104 kb on + strandat 420.104 kb on + strandat 420.104 kb on + strandat 420.115 kb on + strandat 420.125 kb on + strandat 420.140 kb on - strandat 420.237 kb on - strand, within DVU0372at 420.280 kb on - strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.314 kb on - strand, within DVU0372at 420.314 kb on - strand, within DVU0372at 420.319 kb on - strand, within DVU0372at 420.397 kb on - strand, within DVU0372at 420.433 kb on + strand, within DVU0372at 420.441 kb on - strand, within DVU0372at 420.441 kb on - strand, within DVU0372at 420.441 kb on - strand, within DVU0372at 420.446 kb on - strand, within DVU0372at 420.468 kb on + strand, within DVU0372at 420.468 kb on + strand, within DVU0372at 420.483 kb on + strand, within DVU0372at 420.483 kb on + strand, within DVU0372at 420.593 kb on + strand, within DVU0372at 420.599 kb on - strand, within DVU0372at 420.601 kb on - strand, within DVU0372at 420.605 kb on + strand, within DVU0372at 420.605 kb on + strand, within DVU0372at 420.613 kb on - strand, within DVU0372at 420.644 kb on - strand, within DVU0372at 420.644 kb on - strand, within DVU0372at 420.660 kb on + strand, within DVU0372at 420.678 kb on - strand, within DVU0372at 420.706 kb on + strand, within DVU0372at 420.706 kb on + strand, within DVU0372at 420.718 kb on + strand, within DVU0372at 420.726 kb on - strand, within DVU0372at 420.853 kb on - strandat 421.052 kb on - strandat 421.068 kb on - strandat 421.081 kb on + strandat 421.112 kb on + strandat 421.136 kb on + strand, within DVU0373at 421.168 kb on + strand, within DVU0373at 421.226 kb on + strand, within DVU0373at 421.234 kb on - strand, within DVU0373at 421.240 kb on - strand, within DVU0373at 421.293 kb on - strand, within DVU0373at 421.301 kb on + strand, within DVU0373at 421.630 kb on + strand, within DVU0373at 421.639 kb on + strand, within DVU0373at 421.663 kb on + strand, within DVU0373at 421.663 kb on + strand, within DVU0373at 421.663 kb on + strand, within DVU0373at 421.735 kb on - strand, within DVU0373at 421.774 kb on + strand, within DVU0373at 421.782 kb on - strand, within DVU0373at 421.803 kb on - strand, within DVU0373at 421.814 kb on + strand, within DVU0373at 421.814 kb on + strand, within DVU0373at 421.824 kb on - strand, within DVU0373at 421.829 kb on - strand, within DVU0373at 421.895 kb on + strand, within DVU0373at 421.933 kb on - strand, within DVU0373at 421.965 kb on + strand, within DVU0373at 421.967 kb on + strand, within DVU0373at 421.967 kb on + strand, within DVU0373at 422.014 kb on - strand, within DVU0373at 422.014 kb on - strand, within DVU0373at 422.033 kb on + strand, within DVU0373at 422.052 kb on + strand, within DVU0373at 422.076 kb on - strand, within DVU0373at 422.127 kb on + strand, within DVU0373at 422.140 kb on + strand, within DVU0373at 422.210 kb on + strand, within DVU0373at 422.304 kb on - strand, within DVU0373at 422.409 kb on + strand, within DVU0373at 422.409 kb on + strand, within DVU0373at 422.409 kb on + strand, within DVU0373at 422.417 kb on - strand, within DVU0373at 422.467 kb on + strand, within DVU0373at 422.468 kb on + strand, within DVU0373at 422.706 kb on - strand, within DVU0373at 422.725 kb on + strand, within DVU0373at 422.731 kb on - strand, within DVU0373at 422.733 kb on - strand, within DVU0373at 422.733 kb on - strand, within DVU0373at 422.741 kb on + strand, within DVU0373at 422.791 kb on - strand, within DVU0373at 422.825 kb on + strand, within DVU0373at 422.834 kb on + strand, within DVU0373at 422.858 kb on + strand, within DVU0373at 422.858 kb on + strand, within DVU0373at 422.866 kb on - strand, within DVU0373at 422.887 kb on - strand, within DVU0373at 422.942 kb on - strand, within DVU0373at 422.980 kb on - strandat 423.006 kb on + strandat 423.016 kb on + strandat 423.016 kb on + strandat 423.087 kb on + strandat 423.095 kb on - strandat 423.198 kb on - strandat 423.241 kb on + strandat 423.291 kb on - strandat 423.349 kb on - strandat 423.349 kb on - strandat 423.349 kb on - strandat 423.349 kb on - strandat 423.373 kb on - strandat 423.386 kb on + strandat 423.386 kb on + strandat 423.490 kb on - strandat 423.526 kb on + strandat 423.582 kb on + strandat 423.582 kb on + strandat 423.590 kb on - strandat 423.590 kb on - strandat 423.590 kb on - strandat 423.590 kb on - strandat 423.590 kb on - strandat 423.601 kb on - strandat 423.601 kb on - strandat 423.678 kb on + strand, within DVU0374at 423.688 kb on - strand, within DVU0374at 423.815 kb on - strand, within DVU0374at 423.815 kb on - strand, within DVU0374at 423.859 kb on + strand, within DVU0374at 423.867 kb on - strand, within DVU0374at 423.867 kb on - strand, within DVU0374at 423.867 kb on - strand, within DVU0374at 423.872 kb on - strand, within DVU0374at 423.889 kb on + strand, within DVU0374at 424.081 kb on - strand, within DVU0374at 424.115 kb on + strand, within DVU0374at 424.115 kb on + strand, within DVU0374at 424.115 kb on + strand, within DVU0374at 424.138 kb on + strand, within DVU0374

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Fluorophosphate 1mM
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419,935 + +0.2
419,945 + -0.2
419,950 - +0.0
419,952 + -1.7
419,953 - -0.8
419,953 - -0.8
420,104 + -0.2
420,104 + +0.2
420,104 + +1.1
420,115 + -0.5
420,125 + -0.7
420,140 - -1.2
420,237 - DVU0372 0.15 -0.8
420,280 - DVU0372 0.21 +0.3
420,306 + DVU0372 0.25 +1.8
420,306 + DVU0372 0.25 -2.0
420,306 + DVU0372 0.25 -0.6
420,306 + DVU0372 0.25 +0.0
420,314 - DVU0372 0.26 -1.8
420,314 - DVU0372 0.26 -0.5
420,319 - DVU0372 0.26 +0.1
420,397 - DVU0372 0.38 -0.1
420,433 + DVU0372 0.43 +0.5
420,441 - DVU0372 0.44 -2.0
420,441 - DVU0372 0.44 -0.6
420,441 - DVU0372 0.44 +0.0
420,446 - DVU0372 0.45 -2.0
420,468 + DVU0372 0.48 +0.0
420,468 + DVU0372 0.48 -0.9
420,483 + DVU0372 0.50 -0.5
420,483 + DVU0372 0.50 -0.1
420,593 + DVU0372 0.66 -0.2
420,599 - DVU0372 0.67 -2.1
420,601 - DVU0372 0.67 -0.6
420,605 + DVU0372 0.68 +0.9
420,605 + DVU0372 0.68 +0.4
420,613 - DVU0372 0.69 -2.4
420,644 - DVU0372 0.73 -0.1
420,644 - DVU0372 0.73 -1.3
420,660 + DVU0372 0.76 -1.1
420,678 - DVU0372 0.78 +0.8
420,706 + DVU0372 0.82 +1.1
420,706 + DVU0372 0.82 -1.0
420,718 + DVU0372 0.84 +0.1
420,726 - DVU0372 0.85 +0.2
420,853 - -0.2
421,052 - +1.5
421,068 - -0.0
421,081 + +0.2
421,112 + +0.4
421,136 + DVU0373 0.11 -0.5
421,168 + DVU0373 0.12 -0.8
421,226 + DVU0373 0.15 +0.3
421,234 - DVU0373 0.15 +2.4
421,240 - DVU0373 0.15 +1.4
421,293 - DVU0373 0.18 -1.2
421,301 + DVU0373 0.18 -0.2
421,630 + DVU0373 0.32 +0.0
421,639 + DVU0373 0.33 -0.5
421,663 + DVU0373 0.34 +0.2
421,663 + DVU0373 0.34 +0.4
421,663 + DVU0373 0.34 -0.2
421,735 - DVU0373 0.37 +0.3
421,774 + DVU0373 0.38 -0.2
421,782 - DVU0373 0.39 -2.0
421,803 - DVU0373 0.40 +0.1
421,814 + DVU0373 0.40 -0.8
421,814 + DVU0373 0.40 +0.2
421,824 - DVU0373 0.41 +0.5
421,829 - DVU0373 0.41 +0.2
421,895 + DVU0373 0.44 +1.1
421,933 - DVU0373 0.45 +0.3
421,965 + DVU0373 0.47 -1.0
421,967 + DVU0373 0.47 -0.4
421,967 + DVU0373 0.47 -2.0
422,014 - DVU0373 0.49 -0.1
422,014 - DVU0373 0.49 -0.9
422,033 + DVU0373 0.50 +0.3
422,052 + DVU0373 0.50 +1.3
422,076 - DVU0373 0.51 -0.6
422,127 + DVU0373 0.54 -0.6
422,140 + DVU0373 0.54 -0.3
422,210 + DVU0373 0.57 -0.4
422,304 - DVU0373 0.61 +0.1
422,409 + DVU0373 0.66 +0.2
422,409 + DVU0373 0.66 +0.6
422,409 + DVU0373 0.66 +0.5
422,417 - DVU0373 0.66 +0.8
422,467 + DVU0373 0.68 +0.8
422,468 + DVU0373 0.68 -0.1
422,706 - DVU0373 0.79 -0.4
422,725 + DVU0373 0.80 +0.3
422,731 - DVU0373 0.80 -0.3
422,733 - DVU0373 0.80 -0.3
422,733 - DVU0373 0.80 +0.5
422,741 + DVU0373 0.80 -0.1
422,791 - DVU0373 0.82 -0.0
422,825 + DVU0373 0.84 +2.4
422,834 + DVU0373 0.84 +0.2
422,858 + DVU0373 0.85 -0.5
422,858 + DVU0373 0.85 +0.1
422,866 - DVU0373 0.86 -0.2
422,887 - DVU0373 0.87 -3.1
422,942 - DVU0373 0.89 -0.2
422,980 - -0.4
423,006 + -0.7
423,016 + +0.5
423,016 + +1.8
423,087 + -0.4
423,095 - -0.8
423,198 - +0.1
423,241 + -0.3
423,291 - +0.9
423,349 - -1.3
423,349 - +1.5
423,349 - -1.5
423,349 - +1.2
423,373 - +0.3
423,386 + +0.2
423,386 + -2.2
423,490 - -0.8
423,526 + -1.0
423,582 + +0.2
423,582 + +0.5
423,590 - -0.1
423,590 - +1.2
423,590 - -0.3
423,590 - +0.4
423,590 - -0.9
423,601 - -0.2
423,601 - -0.7
423,678 + DVU0374 0.11 -0.8
423,688 - DVU0374 0.11 +1.2
423,815 - DVU0374 0.16 +0.1
423,815 - DVU0374 0.16 -0.7
423,859 + DVU0374 0.18 -0.1
423,867 - DVU0374 0.19 -0.9
423,867 - DVU0374 0.19 -0.9
423,867 - DVU0374 0.19 -0.2
423,872 - DVU0374 0.19 -0.9
423,889 + DVU0374 0.19 +0.6
424,081 - DVU0374 0.27 +0.1
424,115 + DVU0374 0.28 -0.8
424,115 + DVU0374 0.28 -1.0
424,115 + DVU0374 0.28 -0.5
424,138 + DVU0374 0.29 -1.3

Or see this region's nucleotide sequence