Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3056

Experiment: Pyruvate-Sulfate (60-15mM) with Fluorophosphate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrne and DVU3056 are separated by 2 nucleotidesDVU3056 and DVU3057 are separated by 44 nucleotides DVU3055: rne - ribonuclease, Rne/Rng family (TIGR), at 3,181,505 to 3,182,974 rne DVU3056: DVU3056 - conserved hypothetical protein (TIGR), at 3,182,977 to 3,183,630 DVU3056 DVU3057: DVU3057 - oxygen-independent coproporphyrinogen III oxidase, putative (TIGR), at 3,183,675 to 3,185,168 DVU3057 Position (kb) 3182 3183 3184Strain fitness (log2 ratio) -2 -1 0 1 2at 3183.028 kb on + strandat 3183.028 kb on - strandat 3183.037 kb on - strandat 3183.050 kb on + strand, within DVU3056at 3183.078 kb on + strand, within DVU3056at 3183.121 kb on + strand, within DVU3056at 3183.143 kb on + strand, within DVU3056at 3183.144 kb on + strand, within DVU3056at 3183.151 kb on - strand, within DVU3056at 3183.334 kb on - strand, within DVU3056at 3183.366 kb on - strand, within DVU3056at 3183.438 kb on - strand, within DVU3056at 3183.438 kb on - strand, within DVU3056at 3183.457 kb on - strand, within DVU3056at 3183.457 kb on - strand, within DVU3056at 3183.680 kb on + strandat 3183.680 kb on + strandat 3183.685 kb on + strandat 3183.773 kb on + strandat 3183.783 kb on + strandat 3183.783 kb on + strandat 3183.835 kb on + strand, within DVU3057at 3183.859 kb on + strand, within DVU3057at 3184.012 kb on - strand, within DVU3057at 3184.138 kb on + strand, within DVU3057at 3184.215 kb on + strand, within DVU3057at 3184.250 kb on + strand, within DVU3057at 3184.294 kb on + strand, within DVU3057at 3184.323 kb on + strand, within DVU3057at 3184.342 kb on - strand, within DVU3057at 3184.536 kb on - strand, within DVU3057at 3184.536 kb on - strand, within DVU3057at 3184.573 kb on + strand, within DVU3057

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Fluorophosphate 1mM
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3,183,028 + +0.0
3,183,028 - -1.9
3,183,037 - -0.1
3,183,050 + DVU3056 0.11 -0.7
3,183,078 + DVU3056 0.15 +0.2
3,183,121 + DVU3056 0.22 +1.8
3,183,143 + DVU3056 0.25 +0.4
3,183,144 + DVU3056 0.26 -0.1
3,183,151 - DVU3056 0.27 +2.4
3,183,334 - DVU3056 0.55 -0.8
3,183,366 - DVU3056 0.59 -1.8
3,183,438 - DVU3056 0.70 -0.8
3,183,438 - DVU3056 0.70 -0.5
3,183,457 - DVU3056 0.73 -1.3
3,183,457 - DVU3056 0.73 +0.3
3,183,680 + +1.5
3,183,680 + -0.5
3,183,685 + +1.4
3,183,773 + -0.1
3,183,783 + -0.3
3,183,783 + +0.4
3,183,835 + DVU3057 0.11 +0.1
3,183,859 + DVU3057 0.12 +0.7
3,184,012 - DVU3057 0.23 -0.1
3,184,138 + DVU3057 0.31 +0.2
3,184,215 + DVU3057 0.36 +1.6
3,184,250 + DVU3057 0.38 +0.8
3,184,294 + DVU3057 0.41 -0.5
3,184,323 + DVU3057 0.43 +0.0
3,184,342 - DVU3057 0.45 +0.4
3,184,536 - DVU3057 0.58 +0.6
3,184,536 - DVU3057 0.58 -0.2
3,184,573 + DVU3057 0.60 -0.3

Or see this region's nucleotide sequence