Experiment: Succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2736 and Rru_A2737 are separated by 5 nucleotides Rru_A2737 and Rru_A2738 overlap by 4 nucleotides
Rru_A2736: Rru_A2736 - hypothetical protein (NCBI), at 3,163,850 to 3,166,456
_A2736
Rru_A2737: Rru_A2737 - Glycosyl transferase, family 2 (NCBI), at 3,166,462 to 3,167,910
_A2737
Rru_A2738: Rru_A2738 - Glycosyl transferase, group 1 (NCBI), at 3,167,907 to 3,169,529
_A2738
Position (kb)
3166
3167
3168 Strain fitness (log2 ratio)
-2
-1
0
1 at 3165.951 kb on + strand, within Rru_A2736 at 3165.951 kb on + strand, within Rru_A2736 at 3165.952 kb on - strand, within Rru_A2736 at 3166.085 kb on + strand, within Rru_A2736 at 3166.085 kb on + strand, within Rru_A2736 at 3166.085 kb on + strand, within Rru_A2736 at 3166.086 kb on - strand, within Rru_A2736 at 3166.086 kb on - strand, within Rru_A2736 at 3166.086 kb on - strand, within Rru_A2736 at 3166.086 kb on - strand, within Rru_A2736 at 3166.138 kb on - strand, within Rru_A2736 at 3166.138 kb on - strand, within Rru_A2736 at 3166.263 kb on - strand at 3166.271 kb on + strand at 3166.271 kb on + strand at 3166.271 kb on + strand at 3166.454 kb on + strand at 3166.454 kb on + strand at 3166.454 kb on + strand at 3166.454 kb on + strand at 3166.454 kb on + strand at 3166.455 kb on - strand at 3166.455 kb on - strand at 3166.455 kb on - strand at 3166.455 kb on - strand at 3166.455 kb on - strand at 3166.742 kb on + strand, within Rru_A2737 at 3166.742 kb on + strand, within Rru_A2737 at 3166.742 kb on + strand, within Rru_A2737 at 3166.742 kb on + strand, within Rru_A2737 at 3166.742 kb on + strand, within Rru_A2737 at 3166.743 kb on - strand, within Rru_A2737 at 3166.743 kb on - strand, within Rru_A2737 at 3166.743 kb on - strand, within Rru_A2737 at 3166.743 kb on - strand, within Rru_A2737 at 3166.743 kb on - strand, within Rru_A2737 at 3166.743 kb on - strand, within Rru_A2737 at 3166.743 kb on - strand, within Rru_A2737 at 3166.743 kb on - strand, within Rru_A2737 at 3166.743 kb on - strand, within Rru_A2737 at 3166.760 kb on + strand, within Rru_A2737 at 3166.761 kb on - strand, within Rru_A2737 at 3166.971 kb on - strand, within Rru_A2737 at 3166.971 kb on - strand, within Rru_A2737 at 3166.971 kb on - strand, within Rru_A2737 at 3167.012 kb on + strand, within Rru_A2737 at 3167.013 kb on - strand, within Rru_A2737 at 3167.529 kb on + strand, within Rru_A2737 at 3167.530 kb on - strand, within Rru_A2737 at 3167.530 kb on - strand, within Rru_A2737 at 3167.531 kb on + strand, within Rru_A2737 at 3167.531 kb on + strand, within Rru_A2737 at 3167.645 kb on + strand, within Rru_A2737 at 3167.646 kb on - strand, within Rru_A2737 at 3168.029 kb on - strand at 3168.029 kb on - strand at 3168.467 kb on - strand, within Rru_A2738 at 3168.553 kb on + strand, within Rru_A2738 at 3168.720 kb on + strand, within Rru_A2738 at 3168.720 kb on + strand, within Rru_A2738 at 3168.720 kb on + strand, within Rru_A2738 at 3168.721 kb on - strand, within Rru_A2738 at 3168.739 kb on - strand, within Rru_A2738 at 3168.757 kb on + strand, within Rru_A2738 at 3168.758 kb on - strand, within Rru_A2738 at 3168.758 kb on - strand, within Rru_A2738 at 3168.758 kb on - strand, within Rru_A2738 at 3168.758 kb on - strand, within Rru_A2738 at 3168.761 kb on + strand, within Rru_A2738 at 3168.761 kb on + strand, within Rru_A2738 at 3168.761 kb on + strand, within Rru_A2738 at 3168.761 kb on + strand, within Rru_A2738 at 3168.761 kb on + strand, within Rru_A2738 at 3168.762 kb on - strand, within Rru_A2738 at 3168.762 kb on - strand, within Rru_A2738 at 3168.762 kb on - strand, within Rru_A2738 at 3168.803 kb on + strand, within Rru_A2738 at 3168.803 kb on + strand, within Rru_A2738 at 3168.804 kb on - strand, within Rru_A2738 at 3168.823 kb on + strand, within Rru_A2738 at 3168.860 kb on - strand, within Rru_A2738 at 3168.860 kb on - strand, within Rru_A2738
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C) remove 3,165,951 + Rru_A2736 0.81 -0.3 3,165,951 + Rru_A2736 0.81 -0.0 3,165,952 - Rru_A2736 0.81 +0.3 3,166,085 + Rru_A2736 0.86 -0.4 3,166,085 + Rru_A2736 0.86 -0.0 3,166,085 + Rru_A2736 0.86 +0.3 3,166,086 - Rru_A2736 0.86 -0.2 3,166,086 - Rru_A2736 0.86 -0.5 3,166,086 - Rru_A2736 0.86 -0.7 3,166,086 - Rru_A2736 0.86 -0.1 3,166,138 - Rru_A2736 0.88 +0.2 3,166,138 - Rru_A2736 0.88 -0.2 3,166,263 - -0.5 3,166,271 + -0.1 3,166,271 + +0.0 3,166,271 + -0.4 3,166,454 + -0.8 3,166,454 + -0.0 3,166,454 + +1.5 3,166,454 + -1.7 3,166,454 + +0.3 3,166,455 - +0.9 3,166,455 - +0.3 3,166,455 - -0.2 3,166,455 - +0.4 3,166,455 - -0.1 3,166,742 + Rru_A2737 0.19 +0.5 3,166,742 + Rru_A2737 0.19 -1.0 3,166,742 + Rru_A2737 0.19 +0.6 3,166,742 + Rru_A2737 0.19 +1.3 3,166,742 + Rru_A2737 0.19 -0.3 3,166,743 - Rru_A2737 0.19 +0.1 3,166,743 - Rru_A2737 0.19 -0.0 3,166,743 - Rru_A2737 0.19 -0.7 3,166,743 - Rru_A2737 0.19 -0.1 3,166,743 - Rru_A2737 0.19 -0.3 3,166,743 - Rru_A2737 0.19 -0.7 3,166,743 - Rru_A2737 0.19 +0.3 3,166,743 - Rru_A2737 0.19 +0.5 3,166,743 - Rru_A2737 0.19 -0.6 3,166,760 + Rru_A2737 0.21 -1.2 3,166,761 - Rru_A2737 0.21 -0.2 3,166,971 - Rru_A2737 0.35 -0.3 3,166,971 - Rru_A2737 0.35 -0.2 3,166,971 - Rru_A2737 0.35 -0.2 3,167,012 + Rru_A2737 0.38 -0.3 3,167,013 - Rru_A2737 0.38 +1.3 3,167,529 + Rru_A2737 0.74 +1.3 3,167,530 - Rru_A2737 0.74 -0.6 3,167,530 - Rru_A2737 0.74 -0.1 3,167,531 + Rru_A2737 0.74 -0.3 3,167,531 + Rru_A2737 0.74 -0.8 3,167,645 + Rru_A2737 0.82 -1.0 3,167,646 - Rru_A2737 0.82 -0.5 3,168,029 - -0.1 3,168,029 - -0.9 3,168,467 - Rru_A2738 0.35 -0.0 3,168,553 + Rru_A2738 0.40 -0.8 3,168,720 + Rru_A2738 0.50 -0.4 3,168,720 + Rru_A2738 0.50 +0.9 3,168,720 + Rru_A2738 0.50 +0.8 3,168,721 - Rru_A2738 0.50 -0.2 3,168,739 - Rru_A2738 0.51 -0.2 3,168,757 + Rru_A2738 0.52 +1.3 3,168,758 - Rru_A2738 0.52 -1.9 3,168,758 - Rru_A2738 0.52 +0.1 3,168,758 - Rru_A2738 0.52 -0.1 3,168,758 - Rru_A2738 0.52 +0.3 3,168,761 + Rru_A2738 0.53 -0.1 3,168,761 + Rru_A2738 0.53 -0.3 3,168,761 + Rru_A2738 0.53 +0.2 3,168,761 + Rru_A2738 0.53 +0.3 3,168,761 + Rru_A2738 0.53 +1.3 3,168,762 - Rru_A2738 0.53 -0.2 3,168,762 - Rru_A2738 0.53 -0.0 3,168,762 - Rru_A2738 0.53 -0.6 3,168,803 + Rru_A2738 0.55 -0.8 3,168,803 + Rru_A2738 0.55 -0.2 3,168,804 - Rru_A2738 0.55 -0.0 3,168,823 + Rru_A2738 0.56 -0.2 3,168,860 - Rru_A2738 0.59 -0.0 3,168,860 - Rru_A2738 0.59 -0.3
Or see this region's nucleotide sequence