Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2737

Experiment: Succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2736 and Rru_A2737 are separated by 5 nucleotidesRru_A2737 and Rru_A2738 overlap by 4 nucleotides Rru_A2736: Rru_A2736 - hypothetical protein (NCBI), at 3,163,850 to 3,166,456 _A2736 Rru_A2737: Rru_A2737 - Glycosyl transferase, family 2 (NCBI), at 3,166,462 to 3,167,910 _A2737 Rru_A2738: Rru_A2738 - Glycosyl transferase, group 1 (NCBI), at 3,167,907 to 3,169,529 _A2738 Position (kb) 3166 3167 3168Strain fitness (log2 ratio) -2 -1 0 1at 3165.951 kb on + strand, within Rru_A2736at 3165.951 kb on + strand, within Rru_A2736at 3165.952 kb on - strand, within Rru_A2736at 3166.085 kb on + strand, within Rru_A2736at 3166.085 kb on + strand, within Rru_A2736at 3166.085 kb on + strand, within Rru_A2736at 3166.086 kb on - strand, within Rru_A2736at 3166.086 kb on - strand, within Rru_A2736at 3166.086 kb on - strand, within Rru_A2736at 3166.086 kb on - strand, within Rru_A2736at 3166.138 kb on - strand, within Rru_A2736at 3166.138 kb on - strand, within Rru_A2736at 3166.263 kb on - strandat 3166.271 kb on + strandat 3166.271 kb on + strandat 3166.271 kb on + strandat 3166.454 kb on + strandat 3166.454 kb on + strandat 3166.454 kb on + strandat 3166.454 kb on + strandat 3166.454 kb on + strandat 3166.455 kb on - strandat 3166.455 kb on - strandat 3166.455 kb on - strandat 3166.455 kb on - strandat 3166.455 kb on - strandat 3166.742 kb on + strand, within Rru_A2737at 3166.742 kb on + strand, within Rru_A2737at 3166.742 kb on + strand, within Rru_A2737at 3166.742 kb on + strand, within Rru_A2737at 3166.742 kb on + strand, within Rru_A2737at 3166.743 kb on - strand, within Rru_A2737at 3166.743 kb on - strand, within Rru_A2737at 3166.743 kb on - strand, within Rru_A2737at 3166.743 kb on - strand, within Rru_A2737at 3166.743 kb on - strand, within Rru_A2737at 3166.743 kb on - strand, within Rru_A2737at 3166.743 kb on - strand, within Rru_A2737at 3166.743 kb on - strand, within Rru_A2737at 3166.743 kb on - strand, within Rru_A2737at 3166.760 kb on + strand, within Rru_A2737at 3166.761 kb on - strand, within Rru_A2737at 3166.971 kb on - strand, within Rru_A2737at 3166.971 kb on - strand, within Rru_A2737at 3166.971 kb on - strand, within Rru_A2737at 3167.012 kb on + strand, within Rru_A2737at 3167.013 kb on - strand, within Rru_A2737at 3167.529 kb on + strand, within Rru_A2737at 3167.530 kb on - strand, within Rru_A2737at 3167.530 kb on - strand, within Rru_A2737at 3167.531 kb on + strand, within Rru_A2737at 3167.531 kb on + strand, within Rru_A2737at 3167.645 kb on + strand, within Rru_A2737at 3167.646 kb on - strand, within Rru_A2737at 3168.029 kb on - strandat 3168.029 kb on - strandat 3168.467 kb on - strand, within Rru_A2738at 3168.553 kb on + strand, within Rru_A2738at 3168.720 kb on + strand, within Rru_A2738at 3168.720 kb on + strand, within Rru_A2738at 3168.720 kb on + strand, within Rru_A2738at 3168.721 kb on - strand, within Rru_A2738at 3168.739 kb on - strand, within Rru_A2738at 3168.757 kb on + strand, within Rru_A2738at 3168.758 kb on - strand, within Rru_A2738at 3168.758 kb on - strand, within Rru_A2738at 3168.758 kb on - strand, within Rru_A2738at 3168.758 kb on - strand, within Rru_A2738at 3168.761 kb on + strand, within Rru_A2738at 3168.761 kb on + strand, within Rru_A2738at 3168.761 kb on + strand, within Rru_A2738at 3168.761 kb on + strand, within Rru_A2738at 3168.761 kb on + strand, within Rru_A2738at 3168.762 kb on - strand, within Rru_A2738at 3168.762 kb on - strand, within Rru_A2738at 3168.762 kb on - strand, within Rru_A2738at 3168.803 kb on + strand, within Rru_A2738at 3168.803 kb on + strand, within Rru_A2738at 3168.804 kb on - strand, within Rru_A2738at 3168.823 kb on + strand, within Rru_A2738at 3168.860 kb on - strand, within Rru_A2738at 3168.860 kb on - strand, within Rru_A2738

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)
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3,165,951 + Rru_A2736 0.81 -0.3
3,165,951 + Rru_A2736 0.81 -0.0
3,165,952 - Rru_A2736 0.81 +0.3
3,166,085 + Rru_A2736 0.86 -0.4
3,166,085 + Rru_A2736 0.86 -0.0
3,166,085 + Rru_A2736 0.86 +0.3
3,166,086 - Rru_A2736 0.86 -0.2
3,166,086 - Rru_A2736 0.86 -0.5
3,166,086 - Rru_A2736 0.86 -0.7
3,166,086 - Rru_A2736 0.86 -0.1
3,166,138 - Rru_A2736 0.88 +0.2
3,166,138 - Rru_A2736 0.88 -0.2
3,166,263 - -0.5
3,166,271 + -0.1
3,166,271 + +0.0
3,166,271 + -0.4
3,166,454 + -0.8
3,166,454 + -0.0
3,166,454 + +1.5
3,166,454 + -1.7
3,166,454 + +0.3
3,166,455 - +0.9
3,166,455 - +0.3
3,166,455 - -0.2
3,166,455 - +0.4
3,166,455 - -0.1
3,166,742 + Rru_A2737 0.19 +0.5
3,166,742 + Rru_A2737 0.19 -1.0
3,166,742 + Rru_A2737 0.19 +0.6
3,166,742 + Rru_A2737 0.19 +1.3
3,166,742 + Rru_A2737 0.19 -0.3
3,166,743 - Rru_A2737 0.19 +0.1
3,166,743 - Rru_A2737 0.19 -0.0
3,166,743 - Rru_A2737 0.19 -0.7
3,166,743 - Rru_A2737 0.19 -0.1
3,166,743 - Rru_A2737 0.19 -0.3
3,166,743 - Rru_A2737 0.19 -0.7
3,166,743 - Rru_A2737 0.19 +0.3
3,166,743 - Rru_A2737 0.19 +0.5
3,166,743 - Rru_A2737 0.19 -0.6
3,166,760 + Rru_A2737 0.21 -1.2
3,166,761 - Rru_A2737 0.21 -0.2
3,166,971 - Rru_A2737 0.35 -0.3
3,166,971 - Rru_A2737 0.35 -0.2
3,166,971 - Rru_A2737 0.35 -0.2
3,167,012 + Rru_A2737 0.38 -0.3
3,167,013 - Rru_A2737 0.38 +1.3
3,167,529 + Rru_A2737 0.74 +1.3
3,167,530 - Rru_A2737 0.74 -0.6
3,167,530 - Rru_A2737 0.74 -0.1
3,167,531 + Rru_A2737 0.74 -0.3
3,167,531 + Rru_A2737 0.74 -0.8
3,167,645 + Rru_A2737 0.82 -1.0
3,167,646 - Rru_A2737 0.82 -0.5
3,168,029 - -0.1
3,168,029 - -0.9
3,168,467 - Rru_A2738 0.35 -0.0
3,168,553 + Rru_A2738 0.40 -0.8
3,168,720 + Rru_A2738 0.50 -0.4
3,168,720 + Rru_A2738 0.50 +0.9
3,168,720 + Rru_A2738 0.50 +0.8
3,168,721 - Rru_A2738 0.50 -0.2
3,168,739 - Rru_A2738 0.51 -0.2
3,168,757 + Rru_A2738 0.52 +1.3
3,168,758 - Rru_A2738 0.52 -1.9
3,168,758 - Rru_A2738 0.52 +0.1
3,168,758 - Rru_A2738 0.52 -0.1
3,168,758 - Rru_A2738 0.52 +0.3
3,168,761 + Rru_A2738 0.53 -0.1
3,168,761 + Rru_A2738 0.53 -0.3
3,168,761 + Rru_A2738 0.53 +0.2
3,168,761 + Rru_A2738 0.53 +0.3
3,168,761 + Rru_A2738 0.53 +1.3
3,168,762 - Rru_A2738 0.53 -0.2
3,168,762 - Rru_A2738 0.53 -0.0
3,168,762 - Rru_A2738 0.53 -0.6
3,168,803 + Rru_A2738 0.55 -0.8
3,168,803 + Rru_A2738 0.55 -0.2
3,168,804 - Rru_A2738 0.55 -0.0
3,168,823 + Rru_A2738 0.56 -0.2
3,168,860 - Rru_A2738 0.59 -0.0
3,168,860 - Rru_A2738 0.59 -0.3

Or see this region's nucleotide sequence