Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1585

Experiment: Succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1584 and Rru_A1585 are separated by 89 nucleotidesRru_A1585 and Rru_A1586 are separated by 189 nucleotides Rru_A1584: Rru_A1584 - chemotaxis sensory transducer (NCBI), at 1,867,326 to 1,868,996 _A1584 Rru_A1585: Rru_A1585 - putative depolymerase (NCBI), at 1,869,086 to 1,870,174 _A1585 Rru_A1586: Rru_A1586 - Ribosomal protein S2 (NCBI), at 1,870,364 to 1,871,152 _A1586 Position (kb) 1869 1870 1871Strain fitness (log2 ratio) -1 0 1 2at 1868.501 kb on + strand, within Rru_A1584at 1868.501 kb on + strand, within Rru_A1584at 1868.501 kb on + strand, within Rru_A1584at 1868.501 kb on + strand, within Rru_A1584at 1868.501 kb on + strand, within Rru_A1584at 1868.502 kb on - strand, within Rru_A1584at 1868.739 kb on - strand, within Rru_A1584at 1869.221 kb on + strand, within Rru_A1585at 1869.221 kb on + strand, within Rru_A1585at 1869.221 kb on + strand, within Rru_A1585at 1869.221 kb on + strand, within Rru_A1585at 1869.222 kb on - strand, within Rru_A1585at 1869.222 kb on - strand, within Rru_A1585at 1869.222 kb on - strand, within Rru_A1585at 1869.223 kb on + strand, within Rru_A1585at 1869.224 kb on - strand, within Rru_A1585at 1869.224 kb on - strand, within Rru_A1585at 1869.224 kb on - strand, within Rru_A1585at 1869.224 kb on - strand, within Rru_A1585at 1869.294 kb on - strand, within Rru_A1585at 1869.476 kb on + strand, within Rru_A1585at 1869.476 kb on + strand, within Rru_A1585at 1869.476 kb on + strand, within Rru_A1585at 1869.476 kb on + strand, within Rru_A1585at 1869.476 kb on + strand, within Rru_A1585at 1869.476 kb on + strand, within Rru_A1585at 1869.477 kb on - strand, within Rru_A1585at 1869.477 kb on - strand, within Rru_A1585at 1869.726 kb on - strand, within Rru_A1585at 1869.794 kb on + strand, within Rru_A1585at 1869.794 kb on + strand, within Rru_A1585at 1869.794 kb on + strand, within Rru_A1585at 1869.794 kb on + strand, within Rru_A1585at 1869.794 kb on + strand, within Rru_A1585at 1869.795 kb on - strand, within Rru_A1585at 1869.795 kb on - strand, within Rru_A1585at 1869.795 kb on - strand, within Rru_A1585at 1869.795 kb on - strand, within Rru_A1585at 1869.798 kb on + strand, within Rru_A1585at 1869.798 kb on + strand, within Rru_A1585at 1869.799 kb on - strand, within Rru_A1585at 1869.799 kb on - strand, within Rru_A1585at 1869.848 kb on + strand, within Rru_A1585at 1869.848 kb on + strand, within Rru_A1585at 1869.849 kb on - strand, within Rru_A1585at 1869.965 kb on + strand, within Rru_A1585at 1869.965 kb on + strand, within Rru_A1585at 1869.966 kb on - strand, within Rru_A1585at 1869.966 kb on - strand, within Rru_A1585at 1869.966 kb on - strand, within Rru_A1585at 1869.966 kb on - strand, within Rru_A1585at 1869.966 kb on - strand, within Rru_A1585at 1869.967 kb on + strand, within Rru_A1585at 1869.967 kb on + strand, within Rru_A1585at 1870.004 kb on + strand, within Rru_A1585at 1870.004 kb on + strand, within Rru_A1585at 1870.004 kb on + strand, within Rru_A1585at 1870.004 kb on + strand, within Rru_A1585at 1870.004 kb on + strand, within Rru_A1585

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)
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1,868,501 + Rru_A1584 0.70 -0.6
1,868,501 + Rru_A1584 0.70 +0.2
1,868,501 + Rru_A1584 0.70 -0.5
1,868,501 + Rru_A1584 0.70 -0.3
1,868,501 + Rru_A1584 0.70 -0.8
1,868,502 - Rru_A1584 0.70 +0.8
1,868,739 - Rru_A1584 0.85 -1.3
1,869,221 + Rru_A1585 0.12 +0.2
1,869,221 + Rru_A1585 0.12 -0.2
1,869,221 + Rru_A1585 0.12 -0.4
1,869,221 + Rru_A1585 0.12 +0.9
1,869,222 - Rru_A1585 0.12 -0.2
1,869,222 - Rru_A1585 0.12 +0.7
1,869,222 - Rru_A1585 0.12 +1.4
1,869,223 + Rru_A1585 0.13 -0.1
1,869,224 - Rru_A1585 0.13 +1.2
1,869,224 - Rru_A1585 0.13 +0.1
1,869,224 - Rru_A1585 0.13 -1.4
1,869,224 - Rru_A1585 0.13 +0.4
1,869,294 - Rru_A1585 0.19 +0.2
1,869,476 + Rru_A1585 0.36 +0.0
1,869,476 + Rru_A1585 0.36 -0.1
1,869,476 + Rru_A1585 0.36 -0.5
1,869,476 + Rru_A1585 0.36 -0.4
1,869,476 + Rru_A1585 0.36 -0.3
1,869,476 + Rru_A1585 0.36 -0.4
1,869,477 - Rru_A1585 0.36 +0.6
1,869,477 - Rru_A1585 0.36 +1.8
1,869,726 - Rru_A1585 0.59 +0.2
1,869,794 + Rru_A1585 0.65 -0.1
1,869,794 + Rru_A1585 0.65 -0.1
1,869,794 + Rru_A1585 0.65 +0.4
1,869,794 + Rru_A1585 0.65 -0.2
1,869,794 + Rru_A1585 0.65 +0.6
1,869,795 - Rru_A1585 0.65 +1.4
1,869,795 - Rru_A1585 0.65 -0.3
1,869,795 - Rru_A1585 0.65 +1.4
1,869,795 - Rru_A1585 0.65 +0.1
1,869,798 + Rru_A1585 0.65 +0.0
1,869,798 + Rru_A1585 0.65 +0.6
1,869,799 - Rru_A1585 0.65 +1.4
1,869,799 - Rru_A1585 0.65 -0.1
1,869,848 + Rru_A1585 0.70 -1.7
1,869,848 + Rru_A1585 0.70 -0.9
1,869,849 - Rru_A1585 0.70 +1.2
1,869,965 + Rru_A1585 0.81 -0.4
1,869,965 + Rru_A1585 0.81 +1.4
1,869,966 - Rru_A1585 0.81 -0.1
1,869,966 - Rru_A1585 0.81 -0.3
1,869,966 - Rru_A1585 0.81 -0.3
1,869,966 - Rru_A1585 0.81 -0.0
1,869,966 - Rru_A1585 0.81 +0.4
1,869,967 + Rru_A1585 0.81 +1.4
1,869,967 + Rru_A1585 0.81 -0.7
1,870,004 + Rru_A1585 0.84 +0.0
1,870,004 + Rru_A1585 0.84 -1.5
1,870,004 + Rru_A1585 0.84 +0.1
1,870,004 + Rru_A1585 0.84 +0.1
1,870,004 + Rru_A1585 0.84 -0.3

Or see this region's nucleotide sequence