Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1239

Experiment: Succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1238 and Rru_A1239 overlap by 4 nucleotidesRru_A1239 and Rru_A1240 are separated by 53 nucleotides Rru_A1238: Rru_A1238 - Gamma-glutamyl phosphate reductase GPR (NCBI), at 1,460,671 to 1,461,954 _A1238 Rru_A1239: Rru_A1239 - Glutamate 5-kinase, ProB-related (NCBI), at 1,461,951 to 1,463,078 _A1239 Rru_A1240: Rru_A1240 - GTP-binding protein (NCBI), at 1,463,132 to 1,464,307 _A1240 Position (kb) 1461 1462 1463 1464Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1461.229 kb on - strand, within Rru_A1238at 1461.229 kb on - strand, within Rru_A1238at 1462.112 kb on - strand, within Rru_A1239at 1462.572 kb on - strand, within Rru_A1239at 1462.717 kb on - strand, within Rru_A1239at 1462.757 kb on - strand, within Rru_A1239at 1463.233 kb on + strandat 1463.234 kb on - strandat 1463.236 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)
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1,461,229 - Rru_A1238 0.43 -2.2
1,461,229 - Rru_A1238 0.43 -2.5
1,462,112 - Rru_A1239 0.14 -6.1
1,462,572 - Rru_A1239 0.55 -4.5
1,462,717 - Rru_A1239 0.68 -3.9
1,462,757 - Rru_A1239 0.71 -4.4
1,463,233 + +1.4
1,463,234 - -0.8
1,463,236 - -0.7

Or see this region's nucleotide sequence