Experiment: Succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0313 and Rru_A0314 overlap by 8 nucleotides Rru_A0314 and Rru_A0315 are separated by 7 nucleotides
Rru_A0313: Rru_A0313 - Aldehyde ferredoxin oxidoreductase (NCBI), at 380,853 to 382,136
_A0313
Rru_A0314: Rru_A0314 - NADH dehydrogenase (quinone) (NCBI), at 382,129 to 383,646
_A0314
Rru_A0315: Rru_A0315 - NADH dehydrogenase (quinone) (NCBI), at 383,654 to 385,678
_A0315
Position (kb) 382
383
384 Strain fitness (log2 ratio) -1
0
1
2 at 381.162 kb on + strand, within Rru_A0313 at 381.162 kb on + strand, within Rru_A0313 at 381.162 kb on + strand, within Rru_A0313 at 381.213 kb on + strand, within Rru_A0313 at 381.213 kb on + strand, within Rru_A0313 at 381.213 kb on + strand, within Rru_A0313 at 381.214 kb on - strand, within Rru_A0313 at 381.214 kb on - strand, within Rru_A0313 at 381.214 kb on - strand, within Rru_A0313 at 381.963 kb on - strand, within Rru_A0313 at 381.963 kb on - strand, within Rru_A0313 at 381.963 kb on - strand, within Rru_A0313 at 381.965 kb on - strand, within Rru_A0313 at 381.965 kb on - strand, within Rru_A0313 at 382.477 kb on + strand, within Rru_A0314 at 382.489 kb on + strand, within Rru_A0314 at 382.489 kb on + strand, within Rru_A0314 at 382.489 kb on + strand, within Rru_A0314 at 382.490 kb on - strand, within Rru_A0314 at 382.490 kb on - strand, within Rru_A0314 at 382.541 kb on - strand, within Rru_A0314 at 382.543 kb on + strand, within Rru_A0314 at 382.543 kb on + strand, within Rru_A0314 at 382.543 kb on + strand, within Rru_A0314 at 382.543 kb on + strand, within Rru_A0314 at 382.543 kb on + strand, within Rru_A0314 at 382.544 kb on - strand, within Rru_A0314 at 382.544 kb on - strand, within Rru_A0314 at 382.600 kb on + strand, within Rru_A0314 at 382.600 kb on + strand, within Rru_A0314 at 382.601 kb on - strand, within Rru_A0314 at 382.663 kb on + strand, within Rru_A0314 at 382.663 kb on + strand, within Rru_A0314 at 382.663 kb on + strand, within Rru_A0314 at 382.663 kb on + strand, within Rru_A0314 at 382.663 kb on + strand, within Rru_A0314 at 382.663 kb on + strand, within Rru_A0314 at 382.663 kb on + strand, within Rru_A0314 at 382.664 kb on - strand, within Rru_A0314 at 382.664 kb on - strand, within Rru_A0314 at 382.693 kb on + strand, within Rru_A0314 at 382.694 kb on - strand, within Rru_A0314 at 382.694 kb on - strand, within Rru_A0314 at 382.695 kb on + strand, within Rru_A0314 at 382.696 kb on - strand, within Rru_A0314 at 382.696 kb on - strand, within Rru_A0314 at 382.756 kb on + strand, within Rru_A0314 at 382.756 kb on + strand, within Rru_A0314 at 382.756 kb on + strand, within Rru_A0314 at 382.757 kb on - strand, within Rru_A0314 at 382.757 kb on - strand, within Rru_A0314 at 382.757 kb on - strand, within Rru_A0314 at 382.757 kb on - strand, within Rru_A0314 at 382.757 kb on - strand, within Rru_A0314 at 382.757 kb on - strand, within Rru_A0314 at 382.924 kb on + strand, within Rru_A0314 at 382.924 kb on + strand, within Rru_A0314 at 382.925 kb on - strand, within Rru_A0314 at 382.961 kb on - strand, within Rru_A0314 at 382.961 kb on - strand, within Rru_A0314 at 383.065 kb on + strand, within Rru_A0314 at 383.125 kb on + strand, within Rru_A0314 at 383.125 kb on + strand, within Rru_A0314 at 383.126 kb on - strand, within Rru_A0314 at 383.126 kb on - strand, within Rru_A0314 at 383.252 kb on - strand, within Rru_A0314 at 383.252 kb on - strand, within Rru_A0314 at 383.383 kb on + strand, within Rru_A0314 at 383.384 kb on - strand, within Rru_A0314 at 383.384 kb on - strand, within Rru_A0314 at 383.384 kb on - strand, within Rru_A0314 at 383.821 kb on - strand at 383.951 kb on + strand, within Rru_A0315 at 383.952 kb on - strand, within Rru_A0315 at 383.952 kb on - strand, within Rru_A0315 at 383.963 kb on + strand, within Rru_A0315 at 383.963 kb on + strand, within Rru_A0315 at 383.964 kb on - strand, within Rru_A0315 at 383.964 kb on - strand, within Rru_A0315 at 383.964 kb on - strand, within Rru_A0315 at 383.964 kb on - strand, within Rru_A0315 at 384.000 kb on - strand, within Rru_A0315 at 384.002 kb on + strand, within Rru_A0315 at 384.002 kb on + strand, within Rru_A0315 at 384.002 kb on + strand, within Rru_A0315 at 384.003 kb on - strand, within Rru_A0315 at 384.003 kb on - strand, within Rru_A0315 at 384.003 kb on - strand, within Rru_A0315 at 384.003 kb on - strand, within Rru_A0315 at 384.003 kb on - strand, within Rru_A0315 at 384.161 kb on + strand, within Rru_A0315 at 384.162 kb on - strand, within Rru_A0315 at 384.162 kb on - strand, within Rru_A0315 at 384.162 kb on - strand, within Rru_A0315 at 384.300 kb on - strand, within Rru_A0315 at 384.310 kb on + strand, within Rru_A0315 at 384.310 kb on + strand, within Rru_A0315 at 384.443 kb on + strand, within Rru_A0315 at 384.443 kb on + strand, within Rru_A0315 at 384.444 kb on - strand, within Rru_A0315 at 384.444 kb on - strand, within Rru_A0315 at 384.444 kb on - strand, within Rru_A0315 at 384.444 kb on - strand, within Rru_A0315 at 384.617 kb on + strand, within Rru_A0315 at 384.617 kb on + strand, within Rru_A0315 at 384.618 kb on - strand, within Rru_A0315 at 384.618 kb on - strand, within Rru_A0315 at 384.618 kb on - strand, within Rru_A0315 at 384.618 kb on - strand, within Rru_A0315 at 384.618 kb on - strand, within Rru_A0315 at 384.618 kb on - strand, within Rru_A0315
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C) remove 381,162 + Rru_A0313 0.24 -0.2 381,162 + Rru_A0313 0.24 -0.1 381,162 + Rru_A0313 0.24 +0.0 381,213 + Rru_A0313 0.28 -0.0 381,213 + Rru_A0313 0.28 -1.0 381,213 + Rru_A0313 0.28 +1.0 381,214 - Rru_A0313 0.28 -1.0 381,214 - Rru_A0313 0.28 -0.2 381,214 - Rru_A0313 0.28 -0.1 381,963 - Rru_A0313 0.86 -0.4 381,963 - Rru_A0313 0.86 +0.0 381,963 - Rru_A0313 0.86 -0.2 381,965 - Rru_A0313 0.87 -0.3 381,965 - Rru_A0313 0.87 +0.3 382,477 + Rru_A0314 0.23 -0.9 382,489 + Rru_A0314 0.24 -0.2 382,489 + Rru_A0314 0.24 -0.2 382,489 + Rru_A0314 0.24 -0.2 382,490 - Rru_A0314 0.24 -0.3 382,490 - Rru_A0314 0.24 -1.1 382,541 - Rru_A0314 0.27 -0.2 382,543 + Rru_A0314 0.27 -0.6 382,543 + Rru_A0314 0.27 -1.1 382,543 + Rru_A0314 0.27 -0.2 382,543 + Rru_A0314 0.27 -0.6 382,543 + Rru_A0314 0.27 -0.2 382,544 - Rru_A0314 0.27 -0.3 382,544 - Rru_A0314 0.27 -0.2 382,600 + Rru_A0314 0.31 -0.1 382,600 + Rru_A0314 0.31 +0.2 382,601 - Rru_A0314 0.31 +0.1 382,663 + Rru_A0314 0.35 -0.2 382,663 + Rru_A0314 0.35 -1.2 382,663 + Rru_A0314 0.35 +1.2 382,663 + Rru_A0314 0.35 -0.3 382,663 + Rru_A0314 0.35 +1.0 382,663 + Rru_A0314 0.35 +1.2 382,663 + Rru_A0314 0.35 -0.3 382,664 - Rru_A0314 0.35 +0.3 382,664 - Rru_A0314 0.35 +0.2 382,693 + Rru_A0314 0.37 -0.2 382,694 - Rru_A0314 0.37 -0.2 382,694 - Rru_A0314 0.37 +0.3 382,695 + Rru_A0314 0.37 -0.6 382,696 - Rru_A0314 0.37 +0.4 382,696 - Rru_A0314 0.37 +0.1 382,756 + Rru_A0314 0.41 +0.2 382,756 + Rru_A0314 0.41 -0.6 382,756 + Rru_A0314 0.41 -0.2 382,757 - Rru_A0314 0.41 -0.3 382,757 - Rru_A0314 0.41 -0.3 382,757 - Rru_A0314 0.41 -0.4 382,757 - Rru_A0314 0.41 +0.2 382,757 - Rru_A0314 0.41 -0.0 382,757 - Rru_A0314 0.41 +1.5 382,924 + Rru_A0314 0.52 -0.3 382,924 + Rru_A0314 0.52 -0.3 382,925 - Rru_A0314 0.52 +1.2 382,961 - Rru_A0314 0.55 -0.2 382,961 - Rru_A0314 0.55 +1.2 383,065 + Rru_A0314 0.62 -0.1 383,125 + Rru_A0314 0.66 +0.1 383,125 + Rru_A0314 0.66 -0.3 383,126 - Rru_A0314 0.66 +0.5 383,126 - Rru_A0314 0.66 -0.4 383,252 - Rru_A0314 0.74 -0.5 383,252 - Rru_A0314 0.74 +1.8 383,383 + Rru_A0314 0.83 -1.3 383,384 - Rru_A0314 0.83 -0.1 383,384 - Rru_A0314 0.83 -1.4 383,384 - Rru_A0314 0.83 -0.1 383,821 - -0.4 383,951 + Rru_A0315 0.15 -0.8 383,952 - Rru_A0315 0.15 +0.3 383,952 - Rru_A0315 0.15 -0.5 383,963 + Rru_A0315 0.15 -1.3 383,963 + Rru_A0315 0.15 +1.2 383,964 - Rru_A0315 0.15 +0.1 383,964 - Rru_A0315 0.15 -1.1 383,964 - Rru_A0315 0.15 -0.2 383,964 - Rru_A0315 0.15 +0.4 384,000 - Rru_A0315 0.17 +0.1 384,002 + Rru_A0315 0.17 +1.6 384,002 + Rru_A0315 0.17 -0.1 384,002 + Rru_A0315 0.17 -0.1 384,003 - Rru_A0315 0.17 -0.4 384,003 - Rru_A0315 0.17 -0.3 384,003 - Rru_A0315 0.17 +1.2 384,003 - Rru_A0315 0.17 -0.8 384,003 - Rru_A0315 0.17 +0.1 384,161 + Rru_A0315 0.25 +0.1 384,162 - Rru_A0315 0.25 -0.0 384,162 - Rru_A0315 0.25 +1.1 384,162 - Rru_A0315 0.25 +0.5 384,300 - Rru_A0315 0.32 -0.2 384,310 + Rru_A0315 0.32 -0.9 384,310 + Rru_A0315 0.32 -0.4 384,443 + Rru_A0315 0.39 -0.5 384,443 + Rru_A0315 0.39 +1.2 384,444 - Rru_A0315 0.39 -0.2 384,444 - Rru_A0315 0.39 -0.3 384,444 - Rru_A0315 0.39 -0.2 384,444 - Rru_A0315 0.39 +0.0 384,617 + Rru_A0315 0.48 -0.3 384,617 + Rru_A0315 0.48 +0.2 384,618 - Rru_A0315 0.48 -0.7 384,618 - Rru_A0315 0.48 -0.3 384,618 - Rru_A0315 0.48 +1.2 384,618 - Rru_A0315 0.48 -1.6 384,618 - Rru_A0315 0.48 -0.3 384,618 - Rru_A0315 0.48 -0.6
Or see this region's nucleotide sequence