Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0285

Experiment: Succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0284 and Rru_A0285 are separated by 76 nucleotidesRru_A0285 and Rru_A0286 are separated by 9 nucleotidesRru_A0286 and Rru_A0287 are separated by 48 nucleotides Rru_A0284: Rru_A0284 - acetolactate synthase (NCBI), at 348,329 to 350,059 _A0284 Rru_A0285: Rru_A0285 - Aldehyde dehydrogenase (NCBI), at 350,136 to 351,656 _A0285 Rru_A0286: Rru_A0286 - hypothetical protein (NCBI), at 351,666 to 352,466 _A0286 Rru_A0287: Rru_A0287 - hypothetical protein (NCBI), at 352,515 to 353,675 _A0287 Position (kb) 350 351 352Strain fitness (log2 ratio) -1 0 1 2at 349.139 kb on + strand, within Rru_A0284at 349.139 kb on + strand, within Rru_A0284at 349.140 kb on - strand, within Rru_A0284at 349.140 kb on - strand, within Rru_A0284at 349.140 kb on - strand, within Rru_A0284at 349.177 kb on + strand, within Rru_A0284at 349.250 kb on + strand, within Rru_A0284at 349.251 kb on - strand, within Rru_A0284at 349.251 kb on - strand, within Rru_A0284at 349.253 kb on - strand, within Rru_A0284at 349.253 kb on - strand, within Rru_A0284at 349.294 kb on + strand, within Rru_A0284at 349.294 kb on + strand, within Rru_A0284at 349.295 kb on - strand, within Rru_A0284at 349.295 kb on - strand, within Rru_A0284at 349.328 kb on + strand, within Rru_A0284at 349.328 kb on + strand, within Rru_A0284at 349.329 kb on - strand, within Rru_A0284at 349.329 kb on - strand, within Rru_A0284at 349.436 kb on + strand, within Rru_A0284at 349.436 kb on + strand, within Rru_A0284at 349.436 kb on + strand, within Rru_A0284at 349.436 kb on + strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.553 kb on + strand, within Rru_A0284at 349.553 kb on + strand, within Rru_A0284at 349.553 kb on + strand, within Rru_A0284at 349.554 kb on - strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.886 kb on + strand, within Rru_A0284at 349.887 kb on - strandat 350.148 kb on + strandat 350.148 kb on + strandat 350.148 kb on + strandat 350.148 kb on + strandat 350.394 kb on - strand, within Rru_A0285at 350.394 kb on - strand, within Rru_A0285at 350.477 kb on + strand, within Rru_A0285at 350.478 kb on - strand, within Rru_A0285at 350.478 kb on - strand, within Rru_A0285at 350.478 kb on - strand, within Rru_A0285at 350.478 kb on - strand, within Rru_A0285at 350.927 kb on + strand, within Rru_A0285at 350.928 kb on - strand, within Rru_A0285at 351.087 kb on + strand, within Rru_A0285at 351.087 kb on + strand, within Rru_A0285at 351.088 kb on - strand, within Rru_A0285at 351.258 kb on + strand, within Rru_A0285at 351.258 kb on + strand, within Rru_A0285at 351.258 kb on + strand, within Rru_A0285at 351.258 kb on + strand, within Rru_A0285at 351.259 kb on - strand, within Rru_A0285at 351.259 kb on - strand, within Rru_A0285at 351.259 kb on - strand, within Rru_A0285at 351.333 kb on + strand, within Rru_A0285at 351.345 kb on + strand, within Rru_A0285at 351.346 kb on - strand, within Rru_A0285at 351.346 kb on - strand, within Rru_A0285at 351.486 kb on - strand, within Rru_A0285at 351.579 kb on + strandat 351.579 kb on + strandat 351.579 kb on + strandat 351.580 kb on - strandat 351.580 kb on - strandat 351.580 kb on - strandat 351.580 kb on - strandat 351.581 kb on + strandat 351.581 kb on + strandat 351.582 kb on - strandat 351.599 kb on + strandat 351.599 kb on + strandat 351.600 kb on - strandat 351.609 kb on + strandat 351.652 kb on + strandat 351.652 kb on + strandat 351.652 kb on + strandat 351.652 kb on + strandat 351.653 kb on - strandat 351.654 kb on + strandat 351.654 kb on + strandat 351.655 kb on - strandat 351.655 kb on - strandat 351.655 kb on - strandat 351.655 kb on - strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.694 kb on - strandat 351.694 kb on - strandat 351.696 kb on - strandat 351.927 kb on + strand, within Rru_A0286at 351.951 kb on + strand, within Rru_A0286at 351.952 kb on - strand, within Rru_A0286at 351.952 kb on - strand, within Rru_A0286at 351.952 kb on - strand, within Rru_A0286at 351.954 kb on + strand, within Rru_A0286at 351.954 kb on + strand, within Rru_A0286at 351.955 kb on - strand, within Rru_A0286at 351.955 kb on - strand, within Rru_A0286at 352.144 kb on - strand, within Rru_A0286at 352.465 kb on - strandat 352.465 kb on - strandat 352.503 kb on + strandat 352.504 kb on - strandat 352.504 kb on - strandat 352.515 kb on - strandat 352.616 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)
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349,139 + Rru_A0284 0.47 +0.6
349,139 + Rru_A0284 0.47 -0.3
349,140 - Rru_A0284 0.47 +0.4
349,140 - Rru_A0284 0.47 +1.6
349,140 - Rru_A0284 0.47 -0.2
349,177 + Rru_A0284 0.49 +1.2
349,250 + Rru_A0284 0.53 -0.3
349,251 - Rru_A0284 0.53 -0.1
349,251 - Rru_A0284 0.53 +0.2
349,253 - Rru_A0284 0.53 -0.0
349,253 - Rru_A0284 0.53 +1.2
349,294 + Rru_A0284 0.56 -0.1
349,294 + Rru_A0284 0.56 -0.2
349,295 - Rru_A0284 0.56 +0.1
349,295 - Rru_A0284 0.56 -0.1
349,328 + Rru_A0284 0.58 +0.4
349,328 + Rru_A0284 0.58 -1.1
349,329 - Rru_A0284 0.58 +0.3
349,329 - Rru_A0284 0.58 +1.2
349,436 + Rru_A0284 0.64 -0.2
349,436 + Rru_A0284 0.64 +1.2
349,436 + Rru_A0284 0.64 -0.1
349,436 + Rru_A0284 0.64 -0.2
349,437 - Rru_A0284 0.64 +1.2
349,437 - Rru_A0284 0.64 -1.1
349,437 - Rru_A0284 0.64 -0.0
349,437 - Rru_A0284 0.64 -0.2
349,437 - Rru_A0284 0.64 -0.1
349,437 - Rru_A0284 0.64 -0.0
349,437 - Rru_A0284 0.64 -0.2
349,553 + Rru_A0284 0.71 -0.1
349,553 + Rru_A0284 0.71 -0.0
349,553 + Rru_A0284 0.71 +1.2
349,554 - Rru_A0284 0.71 +0.6
349,790 + Rru_A0284 0.84 -0.3
349,790 + Rru_A0284 0.84 +1.2
349,790 + Rru_A0284 0.84 +0.0
349,790 + Rru_A0284 0.84 +1.2
349,790 + Rru_A0284 0.84 -1.0
349,790 + Rru_A0284 0.84 +0.9
349,790 + Rru_A0284 0.84 +1.2
349,791 - Rru_A0284 0.84 +0.1
349,791 - Rru_A0284 0.84 -0.1
349,791 - Rru_A0284 0.84 -0.3
349,791 - Rru_A0284 0.84 -0.7
349,791 - Rru_A0284 0.84 -0.6
349,791 - Rru_A0284 0.84 -0.5
349,791 - Rru_A0284 0.84 -0.9
349,791 - Rru_A0284 0.84 -0.4
349,791 - Rru_A0284 0.84 +0.0
349,791 - Rru_A0284 0.84 -0.3
349,791 - Rru_A0284 0.84 +0.8
349,791 - Rru_A0284 0.84 -0.1
349,791 - Rru_A0284 0.84 +0.1
349,791 - Rru_A0284 0.84 -0.1
349,886 + Rru_A0284 0.90 -0.7
349,887 - +0.3
350,148 + +1.2
350,148 + +1.2
350,148 + -0.0
350,148 + -0.6
350,394 - Rru_A0285 0.17 -0.4
350,394 - Rru_A0285 0.17 +0.9
350,477 + Rru_A0285 0.22 +0.0
350,478 - Rru_A0285 0.22 +0.5
350,478 - Rru_A0285 0.22 -0.5
350,478 - Rru_A0285 0.22 +0.4
350,478 - Rru_A0285 0.22 +0.2
350,927 + Rru_A0285 0.52 -0.2
350,928 - Rru_A0285 0.52 +0.5
351,087 + Rru_A0285 0.63 -0.1
351,087 + Rru_A0285 0.63 -0.2
351,088 - Rru_A0285 0.63 +1.1
351,258 + Rru_A0285 0.74 -0.4
351,258 + Rru_A0285 0.74 -0.1
351,258 + Rru_A0285 0.74 -0.3
351,258 + Rru_A0285 0.74 +0.2
351,259 - Rru_A0285 0.74 -0.3
351,259 - Rru_A0285 0.74 -0.2
351,259 - Rru_A0285 0.74 +0.2
351,333 + Rru_A0285 0.79 -0.2
351,345 + Rru_A0285 0.79 +0.1
351,346 - Rru_A0285 0.80 -0.0
351,346 - Rru_A0285 0.80 -0.2
351,486 - Rru_A0285 0.89 -0.1
351,579 + +1.2
351,579 + -0.4
351,579 + +0.0
351,580 - +0.1
351,580 - -0.9
351,580 - +1.2
351,580 - -0.1
351,581 + +0.3
351,581 + +1.5
351,582 - +1.1
351,599 + +1.8
351,599 + -0.3
351,600 - +1.5
351,609 + +0.2
351,652 + -0.8
351,652 + -1.1
351,652 + +1.2
351,652 + -0.9
351,653 - -0.4
351,654 + +0.0
351,654 + -0.5
351,655 - -0.4
351,655 - -0.4
351,655 - -1.1
351,655 - -0.3
351,693 + -0.1
351,693 + -0.8
351,693 + -1.1
351,693 + -0.7
351,693 + -0.3
351,694 - -0.8
351,694 - +0.1
351,696 - +1.1
351,927 + Rru_A0286 0.33 -0.2
351,951 + Rru_A0286 0.36 -0.8
351,952 - Rru_A0286 0.36 +0.0
351,952 - Rru_A0286 0.36 +0.2
351,952 - Rru_A0286 0.36 +1.2
351,954 + Rru_A0286 0.36 -0.0
351,954 + Rru_A0286 0.36 -0.1
351,955 - Rru_A0286 0.36 +0.2
351,955 - Rru_A0286 0.36 -0.4
352,144 - Rru_A0286 0.60 -0.0
352,465 - +0.2
352,465 - +1.2
352,503 + -0.2
352,504 - -0.0
352,504 - -1.6
352,515 - -0.7
352,616 + -0.0

Or see this region's nucleotide sequence