Experiment: m.b. 2-Furfuraldehyde 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08690 and PGA1_c08700 are separated by 74 nucleotides PGA1_c08700 and PGA1_c08710 are separated by 3 nucleotides PGA1_c08710 and PGA1_c08720 overlap by 4 nucleotides
PGA1_c08690: PGA1_c08690 - hypothetical protein, at 896,261 to 896,776
_c08690
PGA1_c08700: PGA1_c08700 - hypothetical protein, at 896,851 to 897,450
_c08700
PGA1_c08710: PGA1_c08710 - TadE-like protein., at 897,454 to 898,014
_c08710
PGA1_c08720: PGA1_c08720 - hypothetical protein, at 898,011 to 899,693
_c08720
Position (kb) 897
898
899 Strain fitness (log2 ratio) -2
-1
0
1 at 896.518 kb on - strand, within PGA1_c08690 at 896.620 kb on + strand, within PGA1_c08690 at 896.622 kb on + strand, within PGA1_c08690 at 896.626 kb on - strand, within PGA1_c08690 at 896.628 kb on - strand, within PGA1_c08690 at 896.715 kb on - strand, within PGA1_c08690 at 896.749 kb on + strand at 896.749 kb on + strand at 896.749 kb on + strand at 896.757 kb on - strand at 896.757 kb on - strand at 896.770 kb on + strand at 896.814 kb on - strand at 896.848 kb on + strand at 896.848 kb on + strand at 896.856 kb on - strand at 896.856 kb on - strand at 896.856 kb on - strand at 896.856 kb on - strand at 896.882 kb on - strand at 896.891 kb on + strand at 896.891 kb on + strand at 896.959 kb on + strand, within PGA1_c08700 at 896.981 kb on - strand, within PGA1_c08700 at 896.986 kb on - strand, within PGA1_c08700 at 897.064 kb on - strand, within PGA1_c08700 at 897.066 kb on + strand, within PGA1_c08700 at 897.094 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.128 kb on - strand, within PGA1_c08700 at 897.152 kb on - strand, within PGA1_c08700 at 897.246 kb on + strand, within PGA1_c08700 at 897.246 kb on + strand, within PGA1_c08700 at 897.270 kb on + strand, within PGA1_c08700 at 897.278 kb on - strand, within PGA1_c08700 at 897.280 kb on + strand, within PGA1_c08700 at 897.280 kb on + strand, within PGA1_c08700 at 897.394 kb on - strand at 897.419 kb on + strand at 897.427 kb on - strand at 897.475 kb on + strand at 897.631 kb on - strand, within PGA1_c08710 at 897.640 kb on - strand, within PGA1_c08710 at 897.641 kb on - strand, within PGA1_c08710 at 897.660 kb on - strand, within PGA1_c08710 at 897.694 kb on - strand, within PGA1_c08710 at 897.694 kb on - strand, within PGA1_c08710 at 897.733 kb on + strand, within PGA1_c08710 at 897.741 kb on - strand, within PGA1_c08710 at 897.741 kb on - strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.868 kb on - strand, within PGA1_c08710 at 897.870 kb on + strand, within PGA1_c08710 at 897.870 kb on + strand, within PGA1_c08710 at 897.878 kb on + strand, within PGA1_c08710 at 897.878 kb on + strand, within PGA1_c08710 at 897.878 kb on - strand, within PGA1_c08710 at 897.886 kb on - strand, within PGA1_c08710 at 897.886 kb on - strand, within PGA1_c08710 at 897.901 kb on + strand, within PGA1_c08710 at 897.950 kb on - strand, within PGA1_c08710 at 897.968 kb on - strand at 898.070 kb on + strand at 898.078 kb on - strand at 898.078 kb on - strand at 898.119 kb on - strand at 898.127 kb on - strand at 898.149 kb on + strand at 898.161 kb on + strand at 898.192 kb on + strand, within PGA1_c08720 at 898.220 kb on + strand, within PGA1_c08720 at 898.259 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.388 kb on + strand, within PGA1_c08720 at 898.429 kb on - strand, within PGA1_c08720 at 898.431 kb on + strand, within PGA1_c08720 at 898.438 kb on + strand, within PGA1_c08720 at 898.451 kb on + strand, within PGA1_c08720 at 898.451 kb on - strand, within PGA1_c08720 at 898.456 kb on - strand, within PGA1_c08720 at 898.456 kb on - strand, within PGA1_c08720 at 898.547 kb on - strand, within PGA1_c08720 at 898.550 kb on - strand, within PGA1_c08720 at 898.579 kb on - strand, within PGA1_c08720 at 898.622 kb on + strand, within PGA1_c08720 at 898.635 kb on - strand, within PGA1_c08720 at 898.655 kb on + strand, within PGA1_c08720 at 898.730 kb on + strand, within PGA1_c08720 at 898.735 kb on + strand, within PGA1_c08720 at 898.735 kb on + strand, within PGA1_c08720 at 898.778 kb on + strand, within PGA1_c08720 at 898.793 kb on + strand, within PGA1_c08720 at 898.900 kb on - strand, within PGA1_c08720 at 898.952 kb on + strand, within PGA1_c08720 at 898.960 kb on + strand, within PGA1_c08720 at 898.960 kb on + strand, within PGA1_c08720 at 898.960 kb on - strand, within PGA1_c08720 at 898.968 kb on - strand, within PGA1_c08720 at 898.968 kb on - strand, within PGA1_c08720 at 898.970 kb on + strand, within PGA1_c08720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol% remove 896,518 - PGA1_c08690 0.50 -0.2 896,620 + PGA1_c08690 0.70 -0.4 896,622 + PGA1_c08690 0.70 -0.8 896,626 - PGA1_c08690 0.71 +0.6 896,628 - PGA1_c08690 0.71 +0.9 896,715 - PGA1_c08690 0.88 +0.3 896,749 + +0.8 896,749 + -1.5 896,749 + -1.8 896,757 - +0.2 896,757 - -1.3 896,770 + +0.5 896,814 - -0.3 896,848 + +1.1 896,848 + -0.3 896,856 - -0.0 896,856 - +1.0 896,856 - +0.5 896,856 - +0.6 896,882 - +0.6 896,891 + -0.8 896,891 + -0.8 896,959 + PGA1_c08700 0.18 +0.1 896,981 - PGA1_c08700 0.22 -0.4 896,986 - PGA1_c08700 0.23 -0.2 897,064 - PGA1_c08700 0.35 +0.9 897,066 + PGA1_c08700 0.36 -0.5 897,094 + PGA1_c08700 0.41 -0.4 897,111 + PGA1_c08700 0.43 +1.0 897,111 + PGA1_c08700 0.43 -0.6 897,111 + PGA1_c08700 0.43 +0.0 897,111 + PGA1_c08700 0.43 +0.0 897,111 + PGA1_c08700 0.43 +0.2 897,119 - PGA1_c08700 0.45 +0.3 897,119 - PGA1_c08700 0.45 +0.5 897,119 - PGA1_c08700 0.45 -0.0 897,119 - PGA1_c08700 0.45 +0.7 897,119 - PGA1_c08700 0.45 -0.0 897,119 - PGA1_c08700 0.45 +0.1 897,119 - PGA1_c08700 0.45 +0.3 897,128 - PGA1_c08700 0.46 -0.3 897,152 - PGA1_c08700 0.50 -0.9 897,246 + PGA1_c08700 0.66 +0.4 897,246 + PGA1_c08700 0.66 -0.2 897,270 + PGA1_c08700 0.70 -2.2 897,278 - PGA1_c08700 0.71 +0.5 897,280 + PGA1_c08700 0.71 -0.3 897,280 + PGA1_c08700 0.71 +0.1 897,394 - +0.2 897,419 + -1.7 897,427 - -1.5 897,475 + +1.1 897,631 - PGA1_c08710 0.32 -0.3 897,640 - PGA1_c08710 0.33 +0.9 897,641 - PGA1_c08710 0.33 +0.7 897,660 - PGA1_c08710 0.37 -0.7 897,694 - PGA1_c08710 0.43 +1.2 897,694 - PGA1_c08710 0.43 -0.5 897,733 + PGA1_c08710 0.50 -0.3 897,741 - PGA1_c08710 0.51 +1.3 897,741 - PGA1_c08710 0.51 +0.9 897,818 + PGA1_c08710 0.65 -0.8 897,818 + PGA1_c08710 0.65 +0.2 897,818 + PGA1_c08710 0.65 +0.3 897,868 - PGA1_c08710 0.74 +0.6 897,870 + PGA1_c08710 0.74 +0.3 897,870 + PGA1_c08710 0.74 +0.9 897,878 + PGA1_c08710 0.76 +0.2 897,878 + PGA1_c08710 0.76 +0.2 897,878 - PGA1_c08710 0.76 +0.3 897,886 - PGA1_c08710 0.77 +0.6 897,886 - PGA1_c08710 0.77 +0.9 897,901 + PGA1_c08710 0.80 +0.1 897,950 - PGA1_c08710 0.88 -0.3 897,968 - +0.4 898,070 + +0.7 898,078 - -1.3 898,078 - -0.2 898,119 - -0.7 898,127 - +0.0 898,149 + +0.4 898,161 + -1.6 898,192 + PGA1_c08720 0.11 +0.9 898,220 + PGA1_c08720 0.12 -0.1 898,259 + PGA1_c08720 0.15 +0.9 898,297 + PGA1_c08720 0.17 +1.1 898,297 + PGA1_c08720 0.17 +0.4 898,297 + PGA1_c08720 0.17 +1.0 898,305 - PGA1_c08720 0.17 -0.2 898,305 - PGA1_c08720 0.17 +0.4 898,305 - PGA1_c08720 0.17 +0.3 898,361 - PGA1_c08720 0.21 -0.0 898,361 - PGA1_c08720 0.21 -0.1 898,361 - PGA1_c08720 0.21 -0.6 898,361 - PGA1_c08720 0.21 +0.1 898,388 + PGA1_c08720 0.22 +0.6 898,429 - PGA1_c08720 0.25 +0.0 898,431 + PGA1_c08720 0.25 +0.0 898,438 + PGA1_c08720 0.25 +0.2 898,451 + PGA1_c08720 0.26 -0.4 898,451 - PGA1_c08720 0.26 +0.3 898,456 - PGA1_c08720 0.26 -0.5 898,456 - PGA1_c08720 0.26 +1.1 898,547 - PGA1_c08720 0.32 +0.2 898,550 - PGA1_c08720 0.32 -0.4 898,579 - PGA1_c08720 0.34 +0.8 898,622 + PGA1_c08720 0.36 -0.2 898,635 - PGA1_c08720 0.37 +0.1 898,655 + PGA1_c08720 0.38 +0.1 898,730 + PGA1_c08720 0.43 +0.6 898,735 + PGA1_c08720 0.43 +0.6 898,735 + PGA1_c08720 0.43 +0.9 898,778 + PGA1_c08720 0.46 +0.1 898,793 + PGA1_c08720 0.46 -1.2 898,900 - PGA1_c08720 0.53 +0.2 898,952 + PGA1_c08720 0.56 -0.6 898,960 + PGA1_c08720 0.56 +0.0 898,960 + PGA1_c08720 0.56 +0.5 898,960 - PGA1_c08720 0.56 -0.3 898,968 - PGA1_c08720 0.57 +0.3 898,968 - PGA1_c08720 0.57 -0.0 898,970 + PGA1_c08720 0.57 -1.2
Or see this region's nucleotide sequence