Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08430

Experiment: m.b. 2-Furfuraldehyde 0.016 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c08420 and PGA1_c08430 overlap by 4 nucleotidesPGA1_c08430 and PGA1_c08440 are separated by 32 nucleotides PGA1_c08420: PGA1_c08420 - putative 3-hydroxyacyl-CoA dehydrogenase, at 871,363 to 872,838 _c08420 PGA1_c08430: PGA1_c08430 - short chain dehydrogenase / reductase, at 872,835 to 873,608 _c08430 PGA1_c08440: PGA1_c08440 - Helix-turn-helix., at 873,641 to 874,501 _c08440 Position (kb) 872 873 874Strain fitness (log2 ratio) -3 -2 -1 0 1at 871.886 kb on - strand, within PGA1_c08420at 871.902 kb on + strand, within PGA1_c08420at 872.046 kb on + strand, within PGA1_c08420at 872.046 kb on + strand, within PGA1_c08420at 872.054 kb on - strand, within PGA1_c08420at 872.054 kb on - strand, within PGA1_c08420at 872.054 kb on - strand, within PGA1_c08420at 872.054 kb on - strand, within PGA1_c08420at 872.111 kb on - strand, within PGA1_c08420at 872.121 kb on - strand, within PGA1_c08420at 872.129 kb on + strand, within PGA1_c08420at 872.178 kb on + strand, within PGA1_c08420at 872.249 kb on + strand, within PGA1_c08420at 872.344 kb on - strand, within PGA1_c08420at 872.381 kb on + strand, within PGA1_c08420at 872.465 kb on + strand, within PGA1_c08420at 872.473 kb on - strand, within PGA1_c08420at 872.530 kb on + strand, within PGA1_c08420at 872.636 kb on - strand, within PGA1_c08420at 872.726 kb on + strandat 872.776 kb on - strandat 872.814 kb on - strandat 872.829 kb on + strandat 872.834 kb on + strandat 872.839 kb on + strandat 872.847 kb on + strandat 872.855 kb on - strandat 872.859 kb on + strandat 872.872 kb on - strandat 872.878 kb on + strandat 872.986 kb on + strand, within PGA1_c08430at 873.045 kb on + strand, within PGA1_c08430at 873.046 kb on + strand, within PGA1_c08430at 873.046 kb on + strand, within PGA1_c08430at 873.066 kb on + strand, within PGA1_c08430at 873.076 kb on + strand, within PGA1_c08430at 873.110 kb on + strand, within PGA1_c08430at 873.110 kb on + strand, within PGA1_c08430at 873.127 kb on - strand, within PGA1_c08430at 873.203 kb on - strand, within PGA1_c08430at 873.215 kb on + strand, within PGA1_c08430at 873.284 kb on - strand, within PGA1_c08430at 873.317 kb on + strand, within PGA1_c08430at 873.319 kb on - strand, within PGA1_c08430at 873.319 kb on - strand, within PGA1_c08430at 873.357 kb on + strand, within PGA1_c08430at 873.365 kb on - strand, within PGA1_c08430at 873.370 kb on - strand, within PGA1_c08430at 873.375 kb on - strand, within PGA1_c08430at 873.394 kb on + strand, within PGA1_c08430at 873.400 kb on - strand, within PGA1_c08430at 873.410 kb on + strand, within PGA1_c08430at 873.410 kb on + strand, within PGA1_c08430at 873.415 kb on + strand, within PGA1_c08430at 873.418 kb on - strand, within PGA1_c08430at 873.446 kb on + strand, within PGA1_c08430at 873.455 kb on + strand, within PGA1_c08430at 873.457 kb on - strand, within PGA1_c08430at 873.463 kb on - strand, within PGA1_c08430at 873.463 kb on - strand, within PGA1_c08430at 873.577 kb on + strandat 873.585 kb on - strandat 873.607 kb on + strandat 873.674 kb on + strandat 873.674 kb on + strandat 873.703 kb on - strandat 873.815 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.831 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.843 kb on + strand, within PGA1_c08440at 873.882 kb on + strand, within PGA1_c08440at 873.882 kb on + strand, within PGA1_c08440at 873.890 kb on - strand, within PGA1_c08440at 873.890 kb on - strand, within PGA1_c08440at 873.890 kb on - strand, within PGA1_c08440at 873.900 kb on - strand, within PGA1_c08440at 873.958 kb on + strand, within PGA1_c08440at 873.958 kb on + strand, within PGA1_c08440at 873.966 kb on - strand, within PGA1_c08440at 874.057 kb on + strand, within PGA1_c08440at 874.078 kb on - strand, within PGA1_c08440at 874.297 kb on + strand, within PGA1_c08440at 874.398 kb on + strand, within PGA1_c08440at 874.430 kb on + strandat 874.445 kb on + strandat 874.451 kb on - strandat 874.453 kb on - strandat 874.453 kb on - strandat 874.472 kb on + strandat 874.570 kb on + strandat 874.570 kb on + strandat 874.578 kb on - strandat 874.578 kb on - strandat 874.578 kb on - strandat 874.578 kb on - strandat 874.578 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol%
remove
871,886 - PGA1_c08420 0.35 +0.3
871,902 + PGA1_c08420 0.37 -0.2
872,046 + PGA1_c08420 0.46 +0.6
872,046 + PGA1_c08420 0.46 +0.4
872,054 - PGA1_c08420 0.47 -0.2
872,054 - PGA1_c08420 0.47 +1.0
872,054 - PGA1_c08420 0.47 +0.6
872,054 - PGA1_c08420 0.47 -0.8
872,111 - PGA1_c08420 0.51 -0.5
872,121 - PGA1_c08420 0.51 +1.1
872,129 + PGA1_c08420 0.52 -0.4
872,178 + PGA1_c08420 0.55 +0.8
872,249 + PGA1_c08420 0.60 +1.4
872,344 - PGA1_c08420 0.66 +0.7
872,381 + PGA1_c08420 0.69 +0.7
872,465 + PGA1_c08420 0.75 +0.8
872,473 - PGA1_c08420 0.75 +0.5
872,530 + PGA1_c08420 0.79 +0.3
872,636 - PGA1_c08420 0.86 -0.6
872,726 + +0.1
872,776 - +0.3
872,814 - -0.1
872,829 + +0.8
872,834 + -0.1
872,839 + -0.2
872,847 + -0.6
872,855 - +0.4
872,859 + +0.2
872,872 - -2.5
872,878 + -1.5
872,986 + PGA1_c08430 0.20 +0.3
873,045 + PGA1_c08430 0.27 -0.4
873,046 + PGA1_c08430 0.27 -0.4
873,046 + PGA1_c08430 0.27 +0.7
873,066 + PGA1_c08430 0.30 -0.9
873,076 + PGA1_c08430 0.31 -0.3
873,110 + PGA1_c08430 0.36 +0.2
873,110 + PGA1_c08430 0.36 -0.3
873,127 - PGA1_c08430 0.38 +0.4
873,203 - PGA1_c08430 0.48 +0.3
873,215 + PGA1_c08430 0.49 -1.1
873,284 - PGA1_c08430 0.58 +0.8
873,317 + PGA1_c08430 0.62 -0.6
873,319 - PGA1_c08430 0.63 -0.5
873,319 - PGA1_c08430 0.63 -1.9
873,357 + PGA1_c08430 0.67 -0.3
873,365 - PGA1_c08430 0.68 +0.8
873,370 - PGA1_c08430 0.69 -1.3
873,375 - PGA1_c08430 0.70 -0.2
873,394 + PGA1_c08430 0.72 +1.3
873,400 - PGA1_c08430 0.73 -0.6
873,410 + PGA1_c08430 0.74 -0.1
873,410 + PGA1_c08430 0.74 -0.4
873,415 + PGA1_c08430 0.75 +0.4
873,418 - PGA1_c08430 0.75 -1.4
873,446 + PGA1_c08430 0.79 +0.2
873,455 + PGA1_c08430 0.80 +0.2
873,457 - PGA1_c08430 0.80 -0.5
873,463 - PGA1_c08430 0.81 +0.2
873,463 - PGA1_c08430 0.81 +0.7
873,577 + -0.2
873,585 - -0.6
873,607 + -0.1
873,674 + +0.1
873,674 + +0.0
873,703 - -0.7
873,815 + PGA1_c08440 0.20 -1.2
873,828 + PGA1_c08440 0.22 +0.3
873,828 + PGA1_c08440 0.22 -0.4
873,828 + PGA1_c08440 0.22 -0.7
873,828 + PGA1_c08440 0.22 -1.0
873,828 + PGA1_c08440 0.22 +0.4
873,828 + PGA1_c08440 0.22 -0.3
873,828 + PGA1_c08440 0.22 +0.5
873,831 - PGA1_c08440 0.22 -0.7
873,836 - PGA1_c08440 0.23 +0.4
873,836 - PGA1_c08440 0.23 -0.1
873,836 - PGA1_c08440 0.23 -0.0
873,836 - PGA1_c08440 0.23 -2.2
873,836 - PGA1_c08440 0.23 -1.1
873,843 + PGA1_c08440 0.23 -0.2
873,882 + PGA1_c08440 0.28 -0.2
873,882 + PGA1_c08440 0.28 +0.3
873,890 - PGA1_c08440 0.29 -0.3
873,890 - PGA1_c08440 0.29 -0.4
873,890 - PGA1_c08440 0.29 -0.1
873,900 - PGA1_c08440 0.30 -0.9
873,958 + PGA1_c08440 0.37 +0.6
873,958 + PGA1_c08440 0.37 +1.0
873,966 - PGA1_c08440 0.38 -0.1
874,057 + PGA1_c08440 0.48 -0.4
874,078 - PGA1_c08440 0.51 -0.1
874,297 + PGA1_c08440 0.76 +0.5
874,398 + PGA1_c08440 0.88 +0.5
874,430 + +0.1
874,445 + +0.4
874,451 - +0.2
874,453 - -0.1
874,453 - -0.3
874,472 + -0.6
874,570 + -3.4
874,570 + -0.5
874,578 - -2.4
874,578 - +0.1
874,578 - +0.4
874,578 - +1.0
874,578 - -0.2

Or see this region's nucleotide sequence