Experiment: m.b. 2-Furfuraldehyde 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23950 and PGA1_c23960 are separated by 55 nucleotides PGA1_c23960 and PGA1_c23970 are separated by 102 nucleotides PGA1_c23970 and PGA1_c23980 are separated by 89 nucleotides PGA1_c23980 and PGA1_c23990 are separated by 216 nucleotides
PGA1_c23950: PGA1_c23950 - putative lipid A export ATP-binding/permease protein MsbA, at 2,499,914 to 2,501,923
_c23950
PGA1_c23960: PGA1_c23960 - tRNA-modifying protein ygfZ-like protein, at 2,501,979 to 2,502,719
_c23960
PGA1_c23970: PGA1_c23970 - hypothetical protein, at 2,502,822 to 2,503,391
_c23970
PGA1_c23980: PGA1_c23980 - translation elongation factor P, at 2,503,481 to 2,504,044
_c23980
PGA1_c23990: PGA1_c23990 - hypothetical protein, at 2,504,261 to 2,504,578
_c23990
Position (kb)
2502
2503
2504 Strain fitness (log2 ratio)
-1
0
1 at 2501.976 kb on + strand at 2502.520 kb on - strand, within PGA1_c23960 at 2502.707 kb on + strand at 2502.708 kb on + strand at 2502.708 kb on + strand at 2502.833 kb on + strand at 2502.846 kb on - strand at 2502.891 kb on + strand, within PGA1_c23970 at 2502.899 kb on - strand, within PGA1_c23970 at 2502.909 kb on - strand, within PGA1_c23970 at 2502.928 kb on - strand, within PGA1_c23970 at 2503.049 kb on + strand, within PGA1_c23970 at 2503.072 kb on + strand, within PGA1_c23970 at 2503.082 kb on + strand, within PGA1_c23970 at 2503.090 kb on - strand, within PGA1_c23970 at 2503.092 kb on + strand, within PGA1_c23970 at 2503.290 kb on - strand, within PGA1_c23970 at 2503.354 kb on + strand at 2503.354 kb on + strand at 2503.354 kb on + strand at 2503.362 kb on - strand at 2503.485 kb on - strand at 2503.596 kb on - strand, within PGA1_c23980 at 2503.615 kb on - strand, within PGA1_c23980 at 2503.751 kb on - strand, within PGA1_c23980 at 2503.779 kb on - strand, within PGA1_c23980 at 2503.950 kb on + strand, within PGA1_c23980
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol% remove 2,501,976 + +0.3 2,502,520 - PGA1_c23960 0.73 +0.4 2,502,707 + -0.9 2,502,708 + -0.7 2,502,708 + -0.0 2,502,833 + -0.6 2,502,846 - -0.3 2,502,891 + PGA1_c23970 0.12 -0.2 2,502,899 - PGA1_c23970 0.14 -1.1 2,502,909 - PGA1_c23970 0.15 -1.0 2,502,928 - PGA1_c23970 0.19 -0.3 2,503,049 + PGA1_c23970 0.40 +0.6 2,503,072 + PGA1_c23970 0.44 -1.2 2,503,082 + PGA1_c23970 0.46 -0.7 2,503,090 - PGA1_c23970 0.47 -0.3 2,503,092 + PGA1_c23970 0.47 +0.0 2,503,290 - PGA1_c23970 0.82 -0.8 2,503,354 + +0.5 2,503,354 + +0.0 2,503,354 + +0.5 2,503,362 - -0.5 2,503,485 - +0.8 2,503,596 - PGA1_c23980 0.20 -0.6 2,503,615 - PGA1_c23980 0.24 -0.5 2,503,751 - PGA1_c23980 0.48 -0.0 2,503,779 - PGA1_c23980 0.53 -0.1 2,503,950 + PGA1_c23980 0.83 +0.8
Or see this region's nucleotide sequence