Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10350

Experiment: m.b. 2-Furfuraldehyde 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10330 and PGA1_c10340 are separated by 104 nucleotidesPGA1_c10340 and PGA1_c10350 are separated by 1 nucleotidesPGA1_c10350 and PGA1_c10360 are separated by 11 nucleotides PGA1_c10330: PGA1_c10330 - methylcrotonoyl-CoA carboxylase subunit alpha, at 1,070,992 to 1,072,929 _c10330 PGA1_c10340: PGA1_c10340 - hydroxymethylglutaryl-CoA lyase MvaB, at 1,073,034 to 1,073,885 _c10340 PGA1_c10350: PGA1_c10350 - Predicted kinase, at 1,073,887 to 1,074,396 _c10350 PGA1_c10360: PGA1_c10360 - putative enoyl-CoA hydratase, at 1,074,408 to 1,075,190 _c10360 Position (kb) 1073 1074 1075Strain fitness (log2 ratio) -1 0 1 2at 1072.923 kb on + strandat 1072.923 kb on + strandat 1072.925 kb on + strandat 1072.925 kb on + strandat 1072.933 kb on - strandat 1072.992 kb on + strandat 1073.867 kb on - strandat 1073.983 kb on - strand, within PGA1_c10350at 1074.058 kb on + strand, within PGA1_c10350at 1074.063 kb on + strand, within PGA1_c10350at 1074.063 kb on + strand, within PGA1_c10350at 1074.071 kb on - strand, within PGA1_c10350at 1074.071 kb on - strand, within PGA1_c10350at 1074.082 kb on - strand, within PGA1_c10350at 1074.090 kb on + strand, within PGA1_c10350at 1074.092 kb on + strand, within PGA1_c10350at 1074.121 kb on - strand, within PGA1_c10350at 1074.127 kb on + strand, within PGA1_c10350at 1074.132 kb on + strand, within PGA1_c10350at 1074.152 kb on + strand, within PGA1_c10350at 1074.165 kb on + strand, within PGA1_c10350at 1074.186 kb on - strand, within PGA1_c10350at 1074.190 kb on + strand, within PGA1_c10350at 1074.190 kb on + strand, within PGA1_c10350at 1074.208 kb on - strand, within PGA1_c10350at 1074.256 kb on + strand, within PGA1_c10350at 1074.256 kb on + strand, within PGA1_c10350at 1074.256 kb on + strand, within PGA1_c10350at 1074.256 kb on + strand, within PGA1_c10350at 1074.264 kb on - strand, within PGA1_c10350at 1074.264 kb on - strand, within PGA1_c10350at 1074.264 kb on - strand, within PGA1_c10350at 1074.264 kb on - strand, within PGA1_c10350at 1074.291 kb on + strand, within PGA1_c10350at 1074.291 kb on + strand, within PGA1_c10350at 1074.296 kb on + strand, within PGA1_c10350at 1074.304 kb on + strand, within PGA1_c10350at 1074.304 kb on - strand, within PGA1_c10350at 1074.344 kb on + strand, within PGA1_c10350at 1074.367 kb on - strandat 1075.223 kb on + strandat 1075.243 kb on + strandat 1075.274 kb on - strandat 1075.276 kb on + strandat 1075.284 kb on - strandat 1075.284 kb on - strandat 1075.284 kb on - strandat 1075.284 kb on - strandat 1075.284 kb on - strandat 1075.309 kb on - strandat 1075.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol%
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1,072,923 + -1.2
1,072,923 + -0.7
1,072,925 + -1.5
1,072,925 + +0.2
1,072,933 - +0.3
1,072,992 + -0.5
1,073,867 - -0.4
1,073,983 - PGA1_c10350 0.19 +0.8
1,074,058 + PGA1_c10350 0.34 +0.6
1,074,063 + PGA1_c10350 0.35 -1.1
1,074,063 + PGA1_c10350 0.35 -0.7
1,074,071 - PGA1_c10350 0.36 +0.6
1,074,071 - PGA1_c10350 0.36 -0.0
1,074,082 - PGA1_c10350 0.38 +0.6
1,074,090 + PGA1_c10350 0.40 -0.1
1,074,092 + PGA1_c10350 0.40 +1.6
1,074,121 - PGA1_c10350 0.46 -0.1
1,074,127 + PGA1_c10350 0.47 +0.4
1,074,132 + PGA1_c10350 0.48 -1.0
1,074,152 + PGA1_c10350 0.52 +1.6
1,074,165 + PGA1_c10350 0.55 +0.7
1,074,186 - PGA1_c10350 0.59 -0.1
1,074,190 + PGA1_c10350 0.59 -0.3
1,074,190 + PGA1_c10350 0.59 +0.7
1,074,208 - PGA1_c10350 0.63 +0.8
1,074,256 + PGA1_c10350 0.72 -0.1
1,074,256 + PGA1_c10350 0.72 +0.4
1,074,256 + PGA1_c10350 0.72 -0.8
1,074,256 + PGA1_c10350 0.72 -0.1
1,074,264 - PGA1_c10350 0.74 +0.6
1,074,264 - PGA1_c10350 0.74 -0.6
1,074,264 - PGA1_c10350 0.74 +1.0
1,074,264 - PGA1_c10350 0.74 -1.3
1,074,291 + PGA1_c10350 0.79 -0.5
1,074,291 + PGA1_c10350 0.79 -0.4
1,074,296 + PGA1_c10350 0.80 +0.5
1,074,304 + PGA1_c10350 0.82 +1.1
1,074,304 - PGA1_c10350 0.82 +1.0
1,074,344 + PGA1_c10350 0.90 +1.4
1,074,367 - -0.1
1,075,223 + -0.4
1,075,243 + +1.8
1,075,274 - -0.0
1,075,276 + +0.2
1,075,284 - -0.5
1,075,284 - +0.6
1,075,284 - +1.0
1,075,284 - +0.2
1,075,284 - +0.0
1,075,309 - +0.2
1,075,336 - +1.4

Or see this region's nucleotide sequence