Experiment: m.b. 2-Furfuraldehyde 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10330 and PGA1_c10340 are separated by 104 nucleotides PGA1_c10340 and PGA1_c10350 are separated by 1 nucleotides PGA1_c10350 and PGA1_c10360 are separated by 11 nucleotides
PGA1_c10330: PGA1_c10330 - methylcrotonoyl-CoA carboxylase subunit alpha, at 1,070,992 to 1,072,929
_c10330
PGA1_c10340: PGA1_c10340 - hydroxymethylglutaryl-CoA lyase MvaB, at 1,073,034 to 1,073,885
_c10340
PGA1_c10350: PGA1_c10350 - Predicted kinase, at 1,073,887 to 1,074,396
_c10350
PGA1_c10360: PGA1_c10360 - putative enoyl-CoA hydratase, at 1,074,408 to 1,075,190
_c10360
Position (kb)
1073
1074
1075 Strain fitness (log2 ratio)
-1
0
1
2 at 1072.923 kb on + strand at 1072.923 kb on + strand at 1072.925 kb on + strand at 1072.925 kb on + strand at 1072.933 kb on - strand at 1072.992 kb on + strand at 1073.867 kb on - strand at 1073.983 kb on - strand, within PGA1_c10350 at 1074.058 kb on + strand, within PGA1_c10350 at 1074.063 kb on + strand, within PGA1_c10350 at 1074.063 kb on + strand, within PGA1_c10350 at 1074.071 kb on - strand, within PGA1_c10350 at 1074.071 kb on - strand, within PGA1_c10350 at 1074.082 kb on - strand, within PGA1_c10350 at 1074.090 kb on + strand, within PGA1_c10350 at 1074.092 kb on + strand, within PGA1_c10350 at 1074.121 kb on - strand, within PGA1_c10350 at 1074.127 kb on + strand, within PGA1_c10350 at 1074.132 kb on + strand, within PGA1_c10350 at 1074.152 kb on + strand, within PGA1_c10350 at 1074.165 kb on + strand, within PGA1_c10350 at 1074.186 kb on - strand, within PGA1_c10350 at 1074.190 kb on + strand, within PGA1_c10350 at 1074.190 kb on + strand, within PGA1_c10350 at 1074.208 kb on - strand, within PGA1_c10350 at 1074.256 kb on + strand, within PGA1_c10350 at 1074.256 kb on + strand, within PGA1_c10350 at 1074.256 kb on + strand, within PGA1_c10350 at 1074.256 kb on + strand, within PGA1_c10350 at 1074.264 kb on - strand, within PGA1_c10350 at 1074.264 kb on - strand, within PGA1_c10350 at 1074.264 kb on - strand, within PGA1_c10350 at 1074.264 kb on - strand, within PGA1_c10350 at 1074.291 kb on + strand, within PGA1_c10350 at 1074.291 kb on + strand, within PGA1_c10350 at 1074.296 kb on + strand, within PGA1_c10350 at 1074.304 kb on + strand, within PGA1_c10350 at 1074.304 kb on - strand, within PGA1_c10350 at 1074.344 kb on + strand, within PGA1_c10350 at 1074.367 kb on - strand at 1075.223 kb on + strand at 1075.243 kb on + strand at 1075.274 kb on - strand at 1075.276 kb on + strand at 1075.284 kb on - strand at 1075.284 kb on - strand at 1075.284 kb on - strand at 1075.284 kb on - strand at 1075.284 kb on - strand at 1075.309 kb on - strand at 1075.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol% remove 1,072,923 + -1.2 1,072,923 + -0.7 1,072,925 + -1.5 1,072,925 + +0.2 1,072,933 - +0.3 1,072,992 + -0.5 1,073,867 - -0.4 1,073,983 - PGA1_c10350 0.19 +0.8 1,074,058 + PGA1_c10350 0.34 +0.6 1,074,063 + PGA1_c10350 0.35 -1.1 1,074,063 + PGA1_c10350 0.35 -0.7 1,074,071 - PGA1_c10350 0.36 +0.6 1,074,071 - PGA1_c10350 0.36 -0.0 1,074,082 - PGA1_c10350 0.38 +0.6 1,074,090 + PGA1_c10350 0.40 -0.1 1,074,092 + PGA1_c10350 0.40 +1.6 1,074,121 - PGA1_c10350 0.46 -0.1 1,074,127 + PGA1_c10350 0.47 +0.4 1,074,132 + PGA1_c10350 0.48 -1.0 1,074,152 + PGA1_c10350 0.52 +1.6 1,074,165 + PGA1_c10350 0.55 +0.7 1,074,186 - PGA1_c10350 0.59 -0.1 1,074,190 + PGA1_c10350 0.59 -0.3 1,074,190 + PGA1_c10350 0.59 +0.7 1,074,208 - PGA1_c10350 0.63 +0.8 1,074,256 + PGA1_c10350 0.72 -0.1 1,074,256 + PGA1_c10350 0.72 +0.4 1,074,256 + PGA1_c10350 0.72 -0.8 1,074,256 + PGA1_c10350 0.72 -0.1 1,074,264 - PGA1_c10350 0.74 +0.6 1,074,264 - PGA1_c10350 0.74 -0.6 1,074,264 - PGA1_c10350 0.74 +1.0 1,074,264 - PGA1_c10350 0.74 -1.3 1,074,291 + PGA1_c10350 0.79 -0.5 1,074,291 + PGA1_c10350 0.79 -0.4 1,074,296 + PGA1_c10350 0.80 +0.5 1,074,304 + PGA1_c10350 0.82 +1.1 1,074,304 - PGA1_c10350 0.82 +1.0 1,074,344 + PGA1_c10350 0.90 +1.4 1,074,367 - -0.1 1,075,223 + -0.4 1,075,243 + +1.8 1,075,274 - -0.0 1,075,276 + +0.2 1,075,284 - -0.5 1,075,284 - +0.6 1,075,284 - +1.0 1,075,284 - +0.2 1,075,284 - +0.0 1,075,309 - +0.2 1,075,336 - +1.4
Or see this region's nucleotide sequence