Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18315

Experiment: MRS + carbenicillin Time5hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MRS + carbenicillin Time5hr
1,896,620	-				-1.0
1,896,625	+				-0.7
1,896,625	+				-0.6
1,896,625	+				+2.6
1,896,631	-				+0.4
1,896,633	-				-1.6
1,896,633	-				-0.2
1,896,646	-				-2.2
1,896,648	+				-0.0
1,896,648	+				-1.9
1,896,648	+				+1.1
1,896,648	+				-1.7
1,896,654	+				+2.1
1,896,688	-		BBR_RS18310	0.13	+1.4
1,896,725	+		BBR_RS18310	0.17	-1.2
1,896,748	+		BBR_RS18310	0.19	+0.3
1,896,771	-		BBR_RS18310	0.22	-0.6
1,896,774	+		BBR_RS18310	0.22	-0.8
1,896,774	+		BBR_RS18310	0.22	+1.8
1,896,793	+		BBR_RS18310	0.24	-0.6
1,896,796	-		BBR_RS18310	0.24	+0.5
1,896,803	+		BBR_RS18310	0.25	-1.3
1,896,803	+		BBR_RS18310	0.25	-1.2
1,896,811	-		BBR_RS18310	0.26	+1.7
1,896,811	-		BBR_RS18310	0.26	-0.6
1,896,811	-		BBR_RS18310	0.26	-2.0
1,896,811	-		BBR_RS18310	0.26	+2.6
1,896,837	-		BBR_RS18310	0.28	-1.4
1,896,856	+		BBR_RS18310	0.30	-1.8
1,896,864	-		BBR_RS18310	0.31	-1.9
1,896,866	+		BBR_RS18310	0.31	-1.1
1,896,877	+		BBR_RS18310	0.32	-0.0
1,896,884	+		BBR_RS18310	0.33	-0.6
1,896,887	-		BBR_RS18310	0.33	-0.1
1,896,889	+		BBR_RS18310	0.33	-0.4
1,896,889	+		BBR_RS18310	0.33	-0.9
1,896,897	-		BBR_RS18310	0.34	+2.7
1,896,897	-		BBR_RS18310	0.34	-0.2
1,896,897	-		BBR_RS18310	0.34	-0.1
1,896,914	+		BBR_RS18310	0.36	+2.2
1,896,933	+		BBR_RS18310	0.38	-0.6
1,896,934	+		BBR_RS18310	0.38	-1.2
1,896,957	+		BBR_RS18310	0.40	-0.1
1,896,971	-		BBR_RS18310	0.42	-0.3
1,896,971	-		BBR_RS18310	0.42	+3.7
1,896,979	+		BBR_RS18310	0.42	+1.7
1,896,979	+		BBR_RS18310	0.42	+1.4
1,896,993	-		BBR_RS18310	0.44	-1.2
1,897,009	+		BBR_RS18310	0.45	-0.2
1,897,028	+		BBR_RS18310	0.47	+1.0
1,897,039	+		BBR_RS18310	0.48	-0.6
1,897,039	+		BBR_RS18310	0.48	+0.0
1,897,045	+		BBR_RS18310	0.49	+0.0
1,897,046	+		BBR_RS18310	0.49	+1.2
1,897,046	+		BBR_RS18310	0.49	+0.7
1,897,057	+		BBR_RS18310	0.50	+1.7
1,897,080	-		BBR_RS18310	0.52	+0.4
1,897,085	+		BBR_RS18310	0.53	-0.6
1,897,100	-		BBR_RS18310	0.54	-1.6
1,897,105	-		BBR_RS18310	0.55	+1.1
1,897,105	-		BBR_RS18310	0.55	+0.1
1,897,126	-		BBR_RS18310	0.57	+1.6
1,897,128	+		BBR_RS18310	0.57	-1.4
1,897,128	+		BBR_RS18310	0.57	-0.1
1,897,128	+		BBR_RS18310	0.57	+4.1
1,897,128	+		BBR_RS18310	0.57	+0.0
1,897,131	-		BBR_RS18310	0.58	-0.2
1,897,136	-		BBR_RS18310	0.58	+1.0
1,897,136	-		BBR_RS18310	0.58	+0.7
1,897,138	+		BBR_RS18310	0.58	+3.2
1,897,138	+		BBR_RS18310	0.58	-0.7
1,897,156	+		BBR_RS18310	0.60	+0.3
1,897,156	-		BBR_RS18310	0.60	+0.4
1,897,166	+		BBR_RS18310	0.61	-0.6
1,897,179	-		BBR_RS18310	0.62	+1.7
1,897,184	+		BBR_RS18310	0.63	-1.6
1,897,187	-		BBR_RS18310	0.63	-0.6
1,897,200	+		BBR_RS18310	0.64	-2.2
1,897,208	-		BBR_RS18310	0.65	-1.0
1,897,208	-		BBR_RS18310	0.65	-0.8
1,897,208	-		BBR_RS18310	0.65	+0.0
1,897,208	-		BBR_RS18310	0.65	-2.0
1,897,237	-		BBR_RS18310	0.68	-2.9
1,897,237	-		BBR_RS18310	0.68	+2.7
1,897,237	-		BBR_RS18310	0.68	-0.4
1,897,237	-		BBR_RS18310	0.68	+2.9
1,897,237	-		BBR_RS18310	0.68	-2.7
1,897,244	+		BBR_RS18310	0.69	+0.1
1,897,261	+		BBR_RS18310	0.71	-0.2
1,897,264	+		BBR_RS18310	0.71	-0.6
1,897,269	-		BBR_RS18310	0.71	-0.3
1,897,269	-		BBR_RS18310	0.71	-0.6
1,897,269	-		BBR_RS18310	0.71	+2.2
1,897,271	+		BBR_RS18310	0.72	+0.1
1,897,309	+		BBR_RS18310	0.75	+1.2
1,897,309	+		BBR_RS18310	0.75	-1.2
1,897,317	-		BBR_RS18310	0.76	-0.3
1,897,326	+		BBR_RS18310	0.77	-1.1
1,897,334	-		BBR_RS18310	0.78	+2.0
1,897,364	-		BBR_RS18310	0.81	+1.2
1,897,364	-		BBR_RS18310	0.81	-1.6
1,897,388	+		BBR_RS18310	0.83	+1.1
1,897,406	-		BBR_RS18310	0.85	-1.0
1,897,408	-		BBR_RS18310	0.85	+0.4
1,897,432	-		BBR_RS18310	0.88	-1.4
1,897,434	-		BBR_RS18310	0.88	-1.1
1,897,434	-		BBR_RS18310	0.88	-0.2
1,897,455	+				-1.2
1,897,456	+				+1.4
1,897,457	-				-0.4
1,897,457	-				+0.0
1,897,502	-				-2.0
1,897,504	+				-0.6
1,897,513	+				+1.0
1,897,513	+				-0.3
1,897,717	+		BBR_RS18315	0.24	+0.9
1,897,778	+		BBR_RS18315	0.35	+1.7
1,897,785	+		BBR_RS18315	0.37	+3.4
1,897,790	+		BBR_RS18315	0.38	+1.4
1,897,792	-		BBR_RS18315	0.38	+0.4
1,897,952	+		BBR_RS18315	0.68	+2.4
1,897,955	-		BBR_RS18315	0.68	-3.6
1,897,970	-		BBR_RS18315	0.71	+0.0
1,897,975	-		BBR_RS18315	0.72	-2.2
1,897,979	+		BBR_RS18315	0.73	+1.2
1,897,999	+		BBR_RS18315	0.76	+0.7
1,898,043	-		BBR_RS18315	0.84	-1.2
1,898,108	+				-1.0
1,898,116	-				-0.6
1,898,122	+				+1.0
1,898,129	+				+0.6
1,898,129	+				-0.8
1,898,130	-				-0.9
1,898,151	-				+0.1
1,898,157	-				+1.9
1,898,167	+				+1.1
1,898,167	+				+2.0
1,898,177	+				-0.0
1,898,203	+				-0.6
1,898,211	-				+1.4
1,898,211	-				+0.7
1,898,213	-				-1.8
1,898,220	+				+0.0
1,898,228	-				-0.9
1,898,228	-				+0.0
1,898,230	-				-0.6
1,898,259	-				+2.3
1,898,350	+		BBR_RS18320	0.12	+1.0
1,898,351	+		BBR_RS18320	0.12	+1.0
1,898,359	+		BBR_RS18320	0.14	+2.9
1,898,418	-		BBR_RS18320	0.27	-0.1
1,898,455	+		BBR_RS18320	0.36	-0.6
1,898,479	+		BBR_RS18320	0.42	-0.6
1,898,488	-		BBR_RS18320	0.44	-0.3
1,898,545	+		BBR_RS18320	0.57	+1.0
1,898,545	+		BBR_RS18320	0.57	+2.0
1,898,545	+		BBR_RS18320	0.57	+0.3
1,898,553	-		BBR_RS18320	0.59	-0.2
1,898,576	-		BBR_RS18320	0.65	-1.0
1,898,600	-		BBR_RS18320	0.70	-0.3
1,898,666	-		BBR_RS18320	0.86	+1.0
1,898,675	+		BBR_RS18320	0.88	+2.0
1,898,683	-		BBR_RS18320	0.90	-1.6
1,898,683	-		BBR_RS18320	0.90	-0.6
1,898,708	+				+1.0
1,898,708	+				+0.8
1,898,708	+				+1.3
1,898,708	+				+0.0
1,898,742	+				-0.7
1,898,742	+				-0.6
1,898,750	-				+1.7
1,898,780	+				+0.5
1,898,783	-				-1.4
1,898,855	+				-1.2
1,898,862	+				+0.0
1,898,862	+				-0.3
1,898,863	-				-0.0
1,898,863	-				+1.0
1,898,863	-				-0.6
1,898,912	+				+2.6
1,898,947	+				-1.4
1,898,967	-				-0.5
1,899,046	+				-3.2
1,899,048	-				-1.4
1,899,054	-				-0.6
1,899,065	+				-1.2
1,899,067	+				+0.4
1,899,067	+				-0.3
1,899,074	+				-0.8
1,899,108	+		BBR_RS18325	0.17	-0.1
1,899,111	+		BBR_RS18325	0.18	-0.6