Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU_tRNA-Met-1

Experiment: MoLS4 with L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0367 and tRNA-Met are separated by 143 nucleotidestRNA-Met and DVU0368 are separated by 692 nucleotidesDVU0368 and DVU0369 are separated by 131 nucleotides DVU0367: DVU0367 - Ser/Thr protein phosphatase family protein (TIGR), at 416,195 to 416,929 DVU0367 DVU_tRNA-Met-1: tRNA-Met - tRNA with anticodon CAT for Met (VIMSS-AUTO), at 417,073 to 417,149 tRNA-Met DVU0368: DVU0368 - hypothetical protein (TIGR), at 417,842 to 417,946 DVU0368 DVU0369: DVU0369 - hypothetical protein (TIGR), at 418,078 to 418,176 DVU0369 Position (kb) 417 418Strain fitness (log2 ratio) -2 -1 0 1at 416.081 kb on - strandat 416.097 kb on + strandat 416.146 kb on - strandat 416.146 kb on - strandat 416.273 kb on - strand, within DVU0367at 416.313 kb on - strand, within DVU0367at 416.313 kb on - strand, within DVU0367at 416.376 kb on + strand, within DVU0367at 416.405 kb on - strand, within DVU0367at 416.485 kb on - strand, within DVU0367at 416.498 kb on - strand, within DVU0367at 416.552 kb on - strand, within DVU0367at 416.559 kb on + strand, within DVU0367at 416.567 kb on + strand, within DVU0367at 416.604 kb on + strand, within DVU0367at 416.615 kb on - strand, within DVU0367at 416.636 kb on - strand, within DVU0367at 416.686 kb on + strand, within DVU0367at 416.687 kb on + strand, within DVU0367at 416.695 kb on - strand, within DVU0367at 416.708 kb on + strand, within DVU0367at 416.720 kb on + strand, within DVU0367at 416.738 kb on - strand, within DVU0367at 416.767 kb on - strand, within DVU0367at 416.813 kb on - strand, within DVU0367at 416.839 kb on - strand, within DVU0367at 416.847 kb on - strand, within DVU0367at 416.847 kb on - strand, within DVU0367at 416.945 kb on + strandat 416.945 kb on + strandat 417.205 kb on + strandat 417.213 kb on - strandat 417.274 kb on - strandat 417.283 kb on + strandat 417.285 kb on - strandat 417.308 kb on + strandat 417.398 kb on - strandat 417.435 kb on + strandat 417.497 kb on + strandat 417.619 kb on - strandat 417.619 kb on - strandat 417.628 kb on - strandat 417.715 kb on - strandat 417.749 kb on + strandat 417.784 kb on + strandat 417.785 kb on + strandat 417.793 kb on - strandat 417.793 kb on - strandat 417.814 kb on + strandat 417.814 kb on + strandat 417.815 kb on + strandat 417.822 kb on - strandat 417.822 kb on - strandat 417.822 kb on - strandat 417.913 kb on + strand, within DVU0368at 417.921 kb on - strand, within DVU0368

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N)
remove
416,081 - -1.2
416,097 + -0.8
416,146 - +1.1
416,146 - -1.3
416,273 - DVU0367 0.11 +0.8
416,313 - DVU0367 0.16 -0.4
416,313 - DVU0367 0.16 +0.2
416,376 + DVU0367 0.25 -1.6
416,405 - DVU0367 0.29 +0.6
416,485 - DVU0367 0.39 +1.1
416,498 - DVU0367 0.41 +0.5
416,552 - DVU0367 0.49 -0.1
416,559 + DVU0367 0.50 +0.2
416,567 + DVU0367 0.51 +0.6
416,604 + DVU0367 0.56 -0.3
416,615 - DVU0367 0.57 -2.1
416,636 - DVU0367 0.60 -0.3
416,686 + DVU0367 0.67 -0.4
416,687 + DVU0367 0.67 +0.9
416,695 - DVU0367 0.68 -0.6
416,708 + DVU0367 0.70 +1.3
416,720 + DVU0367 0.71 +0.1
416,738 - DVU0367 0.74 +1.2
416,767 - DVU0367 0.78 -0.9
416,813 - DVU0367 0.84 +0.4
416,839 - DVU0367 0.88 +0.3
416,847 - DVU0367 0.89 +0.8
416,847 - DVU0367 0.89 +0.1
416,945 + -0.2
416,945 + +0.8
417,205 + -0.7
417,213 - +0.0
417,274 - +0.6
417,283 + +0.0
417,285 - +1.2
417,308 + -1.1
417,398 - -0.7
417,435 + +0.1
417,497 + +0.1
417,619 - -0.6
417,619 - -0.6
417,628 - -0.2
417,715 - +0.2
417,749 + -0.0
417,784 + -0.1
417,785 + +0.1
417,793 - -0.0
417,793 - +1.3
417,814 + -0.3
417,814 + -2.2
417,815 + -0.6
417,822 - +0.4
417,822 - +0.8
417,822 - +0.9
417,913 + DVU0368 0.68 -1.2
417,921 - DVU0368 0.75 -0.6

Or see this region's nucleotide sequence