Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0449

Experiment: MoLS4 with L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgmd and DVU0449 overlap by 13 nucleotidesDVU0449 and tRNA-Leu are separated by 279 nucleotidestRNA-Leu and ribF are separated by 482 nucleotides DVU0448: gmd - GDP-mannose 4,6-dehydratase (TIGR), at 508,293 to 509,438 gmd DVU0449: DVU0449 - sensor/response regulator (TIGR), at 509,426 to 513,967 DVU0449 DVU_tRNA-Leu-2: tRNA-Leu - tRNA with anticodon CAG for Leu (VIMSS-AUTO), at 514,247 to 514,333 tRNA-Leu DVU0450: ribF - riboflavin biosynthesis protein RibF (TIGR), at 514,816 to 515,760 ribF Position (kb) 509 510 511 512 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 508.536 kb on + strand, within gmdat 508.544 kb on - strand, within gmdat 508.651 kb on + strand, within gmdat 508.826 kb on - strand, within gmdat 508.866 kb on + strand, within gmdat 508.957 kb on - strand, within gmdat 508.959 kb on + strand, within gmdat 509.062 kb on - strand, within gmdat 509.474 kb on + strandat 509.503 kb on - strandat 509.508 kb on - strandat 509.615 kb on - strandat 509.619 kb on + strandat 509.705 kb on + strandat 509.793 kb on - strandat 509.836 kb on + strandat 509.844 kb on - strandat 509.844 kb on - strandat 509.865 kb on + strandat 509.873 kb on - strandat 509.882 kb on - strand, within DVU0449at 509.961 kb on - strand, within DVU0449at 510.114 kb on + strand, within DVU0449at 510.114 kb on + strand, within DVU0449at 510.114 kb on + strand, within DVU0449at 510.127 kb on - strand, within DVU0449at 510.127 kb on - strand, within DVU0449at 510.127 kb on - strand, within DVU0449at 510.127 kb on - strand, within DVU0449at 510.143 kb on + strand, within DVU0449at 510.176 kb on + strand, within DVU0449at 510.184 kb on - strand, within DVU0449at 510.218 kb on - strand, within DVU0449at 510.220 kb on - strand, within DVU0449at 510.240 kb on + strand, within DVU0449at 510.265 kb on - strand, within DVU0449at 510.344 kb on - strand, within DVU0449at 510.349 kb on + strand, within DVU0449at 510.359 kb on + strand, within DVU0449at 510.370 kb on - strand, within DVU0449at 510.417 kb on + strand, within DVU0449at 510.462 kb on + strand, within DVU0449at 510.478 kb on + strand, within DVU0449at 510.498 kb on + strand, within DVU0449at 510.508 kb on + strand, within DVU0449at 510.516 kb on - strand, within DVU0449at 510.526 kb on - strand, within DVU0449at 510.704 kb on + strand, within DVU0449at 510.706 kb on + strand, within DVU0449at 510.840 kb on + strand, within DVU0449at 510.848 kb on - strand, within DVU0449at 510.848 kb on - strand, within DVU0449at 510.868 kb on + strand, within DVU0449at 510.911 kb on - strand, within DVU0449at 510.922 kb on + strand, within DVU0449at 510.957 kb on - strand, within DVU0449at 511.080 kb on + strand, within DVU0449at 511.110 kb on - strand, within DVU0449at 511.236 kb on + strand, within DVU0449at 511.244 kb on - strand, within DVU0449at 511.244 kb on - strand, within DVU0449at 511.244 kb on - strand, within DVU0449at 511.244 kb on - strand, within DVU0449at 511.296 kb on + strand, within DVU0449at 511.296 kb on + strand, within DVU0449at 511.304 kb on - strand, within DVU0449at 511.304 kb on - strand, within DVU0449at 511.371 kb on - strand, within DVU0449at 511.409 kb on - strand, within DVU0449at 511.436 kb on + strand, within DVU0449at 511.449 kb on + strand, within DVU0449at 511.498 kb on - strand, within DVU0449at 511.543 kb on + strand, within DVU0449at 511.551 kb on - strand, within DVU0449at 511.565 kb on - strand, within DVU0449at 511.723 kb on + strand, within DVU0449at 511.731 kb on - strand, within DVU0449at 511.788 kb on + strand, within DVU0449at 511.796 kb on - strand, within DVU0449at 511.801 kb on - strand, within DVU0449at 511.817 kb on - strand, within DVU0449at 511.848 kb on + strand, within DVU0449at 511.900 kb on - strand, within DVU0449at 511.929 kb on - strand, within DVU0449at 511.986 kb on - strand, within DVU0449at 511.986 kb on - strand, within DVU0449at 511.986 kb on - strand, within DVU0449at 511.988 kb on - strand, within DVU0449at 512.029 kb on - strand, within DVU0449at 512.117 kb on + strand, within DVU0449at 512.145 kb on + strand, within DVU0449at 512.145 kb on + strand, within DVU0449at 512.195 kb on + strand, within DVU0449at 512.203 kb on - strand, within DVU0449at 512.208 kb on - strand, within DVU0449at 512.253 kb on + strand, within DVU0449at 512.289 kb on + strand, within DVU0449at 512.330 kb on - strand, within DVU0449at 512.335 kb on + strand, within DVU0449at 512.395 kb on - strand, within DVU0449at 512.399 kb on + strand, within DVU0449at 512.466 kb on - strand, within DVU0449at 512.466 kb on - strand, within DVU0449at 512.550 kb on + strand, within DVU0449at 512.555 kb on + strand, within DVU0449at 512.560 kb on + strand, within DVU0449at 512.601 kb on + strand, within DVU0449at 512.606 kb on + strand, within DVU0449at 512.609 kb on - strand, within DVU0449at 512.628 kb on - strand, within DVU0449at 512.688 kb on + strand, within DVU0449at 512.707 kb on + strand, within DVU0449at 512.707 kb on + strand, within DVU0449at 512.715 kb on - strand, within DVU0449at 512.715 kb on - strand, within DVU0449at 512.715 kb on - strand, within DVU0449at 512.811 kb on + strand, within DVU0449at 512.811 kb on + strand, within DVU0449at 512.818 kb on + strand, within DVU0449at 512.831 kb on - strand, within DVU0449at 512.852 kb on + strand, within DVU0449at 512.871 kb on + strand, within DVU0449at 512.927 kb on + strand, within DVU0449at 512.936 kb on - strand, within DVU0449at 512.936 kb on - strand, within DVU0449at 512.990 kb on - strand, within DVU0449at 513.050 kb on - strand, within DVU0449at 513.069 kb on + strand, within DVU0449at 513.092 kb on + strand, within DVU0449at 513.092 kb on + strand, within DVU0449at 513.092 kb on + strand, within DVU0449at 513.100 kb on - strand, within DVU0449at 513.100 kb on - strand, within DVU0449at 513.100 kb on - strand, within DVU0449at 513.100 kb on - strand, within DVU0449at 513.110 kb on - strand, within DVU0449at 513.127 kb on + strand, within DVU0449at 513.167 kb on - strand, within DVU0449at 513.207 kb on - strand, within DVU0449at 513.239 kb on - strand, within DVU0449at 513.249 kb on - strand, within DVU0449at 513.314 kb on + strand, within DVU0449at 513.319 kb on + strand, within DVU0449at 513.319 kb on + strand, within DVU0449at 513.422 kb on + strand, within DVU0449at 513.468 kb on - strand, within DVU0449at 513.526 kb on + strandat 513.549 kb on - strandat 513.589 kb on - strandat 513.622 kb on + strandat 513.622 kb on + strandat 513.630 kb on - strandat 513.650 kb on - strandat 513.696 kb on + strandat 513.719 kb on + strandat 513.719 kb on + strandat 513.719 kb on + strandat 513.801 kb on + strandat 513.825 kb on - strandat 514.002 kb on + strandat 514.068 kb on + strandat 514.068 kb on + strandat 514.068 kb on + strandat 514.076 kb on - strandat 514.089 kb on + strandat 514.089 kb on + strandat 514.091 kb on - strandat 514.141 kb on - strandat 514.170 kb on + strandat 514.420 kb on - strandat 514.431 kb on - strandat 514.556 kb on - strandat 514.561 kb on + strandat 514.561 kb on + strandat 514.561 kb on + strandat 514.561 kb on + strandat 514.569 kb on - strandat 514.569 kb on - strandat 514.569 kb on - strandat 514.576 kb on + strandat 514.584 kb on - strandat 514.585 kb on + strandat 514.592 kb on - strandat 514.631 kb on + strandat 514.653 kb on + strandat 514.694 kb on - strandat 514.710 kb on + strandat 514.739 kb on + strandat 514.749 kb on + strandat 514.802 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N)
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508,536 + gmd DVU0448 0.21 +1.4
508,544 - gmd DVU0448 0.22 +0.1
508,651 + gmd DVU0448 0.31 -2.0
508,826 - gmd DVU0448 0.47 -0.9
508,866 + gmd DVU0448 0.50 +0.8
508,957 - gmd DVU0448 0.58 -1.0
508,959 + gmd DVU0448 0.58 +0.4
509,062 - gmd DVU0448 0.67 +1.4
509,474 + -0.7
509,503 - -0.1
509,508 - -1.0
509,615 - -0.3
509,619 + -0.2
509,705 + -0.2
509,793 - +0.2
509,836 + -1.2
509,844 - -0.0
509,844 - -0.2
509,865 + +0.0
509,873 - +0.6
509,882 - DVU0449 0.10 +0.8
509,961 - DVU0449 0.12 +1.0
510,114 + DVU0449 0.15 +0.3
510,114 + DVU0449 0.15 -0.6
510,114 + DVU0449 0.15 -0.2
510,127 - DVU0449 0.15 +0.4
510,127 - DVU0449 0.15 -0.7
510,127 - DVU0449 0.15 -0.7
510,127 - DVU0449 0.15 +0.7
510,143 + DVU0449 0.16 +0.8
510,176 + DVU0449 0.17 +1.0
510,184 - DVU0449 0.17 -0.2
510,218 - DVU0449 0.17 +0.1
510,220 - DVU0449 0.17 -1.1
510,240 + DVU0449 0.18 +0.3
510,265 - DVU0449 0.18 +1.2
510,344 - DVU0449 0.20 +0.5
510,349 + DVU0449 0.20 -1.3
510,359 + DVU0449 0.21 +3.7
510,370 - DVU0449 0.21 +0.1
510,417 + DVU0449 0.22 +0.2
510,462 + DVU0449 0.23 -3.2
510,478 + DVU0449 0.23 +0.1
510,498 + DVU0449 0.24 +0.2
510,508 + DVU0449 0.24 -1.4
510,516 - DVU0449 0.24 +1.9
510,526 - DVU0449 0.24 -0.1
510,704 + DVU0449 0.28 +0.4
510,706 + DVU0449 0.28 +1.2
510,840 + DVU0449 0.31 -0.8
510,848 - DVU0449 0.31 +2.4
510,848 - DVU0449 0.31 +0.3
510,868 + DVU0449 0.32 -0.3
510,911 - DVU0449 0.33 -1.4
510,922 + DVU0449 0.33 -1.5
510,957 - DVU0449 0.34 +0.6
511,080 + DVU0449 0.36 +1.1
511,110 - DVU0449 0.37 +0.6
511,236 + DVU0449 0.40 -0.5
511,244 - DVU0449 0.40 +0.0
511,244 - DVU0449 0.40 -0.0
511,244 - DVU0449 0.40 +0.1
511,244 - DVU0449 0.40 +1.0
511,296 + DVU0449 0.41 +0.1
511,296 + DVU0449 0.41 -0.3
511,304 - DVU0449 0.41 -0.9
511,304 - DVU0449 0.41 -0.6
511,371 - DVU0449 0.43 -0.1
511,409 - DVU0449 0.44 +0.1
511,436 + DVU0449 0.44 +1.3
511,449 + DVU0449 0.45 +0.3
511,498 - DVU0449 0.46 +0.1
511,543 + DVU0449 0.47 +0.8
511,551 - DVU0449 0.47 -0.7
511,565 - DVU0449 0.47 -0.1
511,723 + DVU0449 0.51 +1.2
511,731 - DVU0449 0.51 -0.1
511,788 + DVU0449 0.52 -0.0
511,796 - DVU0449 0.52 -1.4
511,801 - DVU0449 0.52 -0.5
511,817 - DVU0449 0.53 -1.3
511,848 + DVU0449 0.53 -2.8
511,900 - DVU0449 0.54 -0.0
511,929 - DVU0449 0.55 -1.5
511,986 - DVU0449 0.56 -0.4
511,986 - DVU0449 0.56 +1.4
511,986 - DVU0449 0.56 +0.0
511,988 - DVU0449 0.56 +0.0
512,029 - DVU0449 0.57 +0.5
512,117 + DVU0449 0.59 +0.1
512,145 + DVU0449 0.60 +0.1
512,145 + DVU0449 0.60 +0.8
512,195 + DVU0449 0.61 -0.2
512,203 - DVU0449 0.61 -1.0
512,208 - DVU0449 0.61 -0.6
512,253 + DVU0449 0.62 -0.4
512,289 + DVU0449 0.63 +0.2
512,330 - DVU0449 0.64 +0.1
512,335 + DVU0449 0.64 +1.3
512,395 - DVU0449 0.65 +0.5
512,399 + DVU0449 0.65 +0.2
512,466 - DVU0449 0.67 -1.4
512,466 - DVU0449 0.67 +0.1
512,550 + DVU0449 0.69 +0.4
512,555 + DVU0449 0.69 -0.3
512,560 + DVU0449 0.69 -0.2
512,601 + DVU0449 0.70 +0.7
512,606 + DVU0449 0.70 +0.2
512,609 - DVU0449 0.70 -0.1
512,628 - DVU0449 0.70 -0.2
512,688 + DVU0449 0.72 +0.5
512,707 + DVU0449 0.72 +0.2
512,707 + DVU0449 0.72 -0.2
512,715 - DVU0449 0.72 +0.1
512,715 - DVU0449 0.72 +0.1
512,715 - DVU0449 0.72 -0.2
512,811 + DVU0449 0.75 -0.4
512,811 + DVU0449 0.75 -0.4
512,818 + DVU0449 0.75 -0.1
512,831 - DVU0449 0.75 -0.1
512,852 + DVU0449 0.75 -0.4
512,871 + DVU0449 0.76 +0.7
512,927 + DVU0449 0.77 +0.0
512,936 - DVU0449 0.77 -0.4
512,936 - DVU0449 0.77 +0.3
512,990 - DVU0449 0.78 +1.3
513,050 - DVU0449 0.80 -1.7
513,069 + DVU0449 0.80 -0.0
513,092 + DVU0449 0.81 -1.6
513,092 + DVU0449 0.81 -0.2
513,092 + DVU0449 0.81 +0.0
513,100 - DVU0449 0.81 +0.1
513,100 - DVU0449 0.81 +0.3
513,100 - DVU0449 0.81 -0.3
513,100 - DVU0449 0.81 +1.7
513,110 - DVU0449 0.81 -0.6
513,127 + DVU0449 0.81 -1.4
513,167 - DVU0449 0.82 -0.4
513,207 - DVU0449 0.83 -1.7
513,239 - DVU0449 0.84 +0.1
513,249 - DVU0449 0.84 +0.8
513,314 + DVU0449 0.86 -0.7
513,319 + DVU0449 0.86 +1.4
513,319 + DVU0449 0.86 -0.3
513,422 + DVU0449 0.88 -0.7
513,468 - DVU0449 0.89 -0.1
513,526 + +0.3
513,549 - -0.6
513,589 - -0.7
513,622 + -1.4
513,622 + -0.4
513,630 - +0.3
513,650 - -0.8
513,696 + -0.3
513,719 + +0.1
513,719 + +1.4
513,719 + -0.3
513,801 + +1.1
513,825 - +0.5
514,002 + -0.4
514,068 + +0.6
514,068 + +1.1
514,068 + +1.0
514,076 - +0.1
514,089 + -1.6
514,089 + -1.7
514,091 - -0.8
514,141 - +0.1
514,170 + -2.1
514,420 - +0.4
514,431 - +0.7
514,556 - +0.2
514,561 + +0.1
514,561 + +0.6
514,561 + +0.6
514,561 + -0.5
514,569 - -0.4
514,569 - -2.0
514,569 - +1.6
514,576 + +0.3
514,584 - +0.0
514,585 + -0.1
514,592 - +0.4
514,631 + -0.8
514,653 + -0.4
514,694 - -0.4
514,710 + +0.1
514,739 + -0.5
514,749 + -0.1
514,802 - +0.5

Or see this region's nucleotide sequence