Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0256

Experiment: MoLS4 with L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0255 and DVU0256 are separated by 109 nucleotidesDVU0256 and rrsB are separated by 510 nucleotides DVU0255: DVU0255 - hypothetical protein (TIGR), at 290,357 to 290,911 DVU0255 DVU0256: DVU0256 - ATP-dependent RNA helicase, DEAD/DEAH box family (TIGR), at 291,021 to 294,386 DVU0256 Dv16SB: rrsB - 16S ribosomal RNA (RefSeq), at 294,897 to 296,437 rrsB Position (kb) 291 292 293 294 295Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 290.082 kb on + strandat 290.082 kb on + strandat 290.090 kb on - strandat 290.090 kb on - strandat 290.261 kb on + strandat 290.365 kb on - strandat 290.406 kb on + strandat 290.414 kb on - strand, within DVU0255at 290.493 kb on - strand, within DVU0255at 290.564 kb on - strand, within DVU0255at 290.599 kb on - strand, within DVU0255at 290.601 kb on - strand, within DVU0255at 290.623 kb on - strand, within DVU0255at 290.650 kb on - strand, within DVU0255at 290.669 kb on + strand, within DVU0255at 290.677 kb on - strand, within DVU0255at 290.677 kb on - strand, within DVU0255at 290.689 kb on + strand, within DVU0255at 290.693 kb on - strand, within DVU0255at 290.697 kb on - strand, within DVU0255at 290.701 kb on + strand, within DVU0255at 290.701 kb on + strand, within DVU0255at 290.709 kb on - strand, within DVU0255at 290.709 kb on - strand, within DVU0255at 290.713 kb on + strand, within DVU0255at 290.731 kb on + strand, within DVU0255at 290.769 kb on + strand, within DVU0255at 290.777 kb on + strand, within DVU0255at 290.777 kb on - strand, within DVU0255at 290.808 kb on + strand, within DVU0255at 290.808 kb on + strand, within DVU0255at 290.808 kb on - strand, within DVU0255at 290.840 kb on - strand, within DVU0255at 290.871 kb on + strandat 290.905 kb on + strandat 291.069 kb on + strandat 291.079 kb on + strandat 291.104 kb on + strandat 291.116 kb on + strandat 291.149 kb on + strandat 291.174 kb on + strandat 291.182 kb on - strandat 291.224 kb on + strandat 291.242 kb on + strandat 291.255 kb on - strandat 291.304 kb on - strandat 291.305 kb on + strandat 291.314 kb on + strandat 291.337 kb on - strandat 291.354 kb on + strandat 291.362 kb on - strand, within DVU0256at 291.365 kb on + strand, within DVU0256at 291.365 kb on + strand, within DVU0256at 291.395 kb on - strand, within DVU0256at 291.465 kb on + strand, within DVU0256at 291.473 kb on - strand, within DVU0256at 291.492 kb on - strand, within DVU0256at 291.523 kb on + strand, within DVU0256at 291.558 kb on + strand, within DVU0256at 291.558 kb on + strand, within DVU0256at 291.561 kb on - strand, within DVU0256at 291.574 kb on + strand, within DVU0256at 291.577 kb on + strand, within DVU0256at 291.590 kb on - strand, within DVU0256at 291.639 kb on - strand, within DVU0256at 291.676 kb on + strand, within DVU0256at 291.681 kb on + strand, within DVU0256at 291.713 kb on + strand, within DVU0256at 291.731 kb on - strand, within DVU0256at 291.839 kb on - strand, within DVU0256at 291.854 kb on + strand, within DVU0256at 291.886 kb on - strand, within DVU0256at 291.892 kb on - strand, within DVU0256at 292.127 kb on - strand, within DVU0256at 292.145 kb on - strand, within DVU0256at 292.162 kb on + strand, within DVU0256at 292.254 kb on + strand, within DVU0256at 292.262 kb on - strand, within DVU0256at 292.262 kb on - strand, within DVU0256at 292.303 kb on + strand, within DVU0256at 292.305 kb on + strand, within DVU0256at 292.349 kb on + strand, within DVU0256at 292.362 kb on - strand, within DVU0256at 292.364 kb on + strand, within DVU0256at 292.405 kb on + strand, within DVU0256at 292.437 kb on - strand, within DVU0256at 292.452 kb on - strand, within DVU0256at 292.452 kb on - strand, within DVU0256at 292.461 kb on + strand, within DVU0256at 292.469 kb on - strand, within DVU0256at 292.469 kb on - strand, within DVU0256at 292.485 kb on - strand, within DVU0256at 292.512 kb on - strand, within DVU0256at 292.571 kb on + strand, within DVU0256at 292.615 kb on + strand, within DVU0256at 292.661 kb on - strand, within DVU0256at 292.701 kb on - strand, within DVU0256at 292.756 kb on + strand, within DVU0256at 292.761 kb on + strand, within DVU0256at 292.764 kb on - strand, within DVU0256at 292.767 kb on + strand, within DVU0256at 292.769 kb on - strand, within DVU0256at 292.769 kb on - strand, within DVU0256at 292.788 kb on + strand, within DVU0256at 292.789 kb on - strand, within DVU0256at 292.829 kb on + strand, within DVU0256at 292.900 kb on + strand, within DVU0256at 292.916 kb on + strand, within DVU0256at 292.938 kb on + strand, within DVU0256at 292.967 kb on - strand, within DVU0256at 293.004 kb on + strand, within DVU0256at 293.004 kb on + strand, within DVU0256at 293.004 kb on + strand, within DVU0256at 293.012 kb on - strand, within DVU0256at 293.012 kb on - strand, within DVU0256at 293.111 kb on + strand, within DVU0256at 293.188 kb on + strand, within DVU0256at 293.231 kb on + strand, within DVU0256at 293.239 kb on - strand, within DVU0256at 293.277 kb on - strand, within DVU0256at 293.277 kb on - strand, within DVU0256at 293.295 kb on - strand, within DVU0256at 293.318 kb on - strand, within DVU0256at 293.333 kb on - strand, within DVU0256at 293.356 kb on - strand, within DVU0256at 293.421 kb on - strand, within DVU0256at 293.486 kb on + strand, within DVU0256at 293.492 kb on - strand, within DVU0256at 293.498 kb on + strand, within DVU0256at 293.521 kb on + strand, within DVU0256at 293.731 kb on + strand, within DVU0256at 293.783 kb on - strand, within DVU0256at 293.800 kb on + strand, within DVU0256at 293.840 kb on + strand, within DVU0256at 293.855 kb on + strand, within DVU0256at 293.863 kb on - strand, within DVU0256at 293.863 kb on - strand, within DVU0256at 293.863 kb on - strand, within DVU0256at 293.884 kb on - strand, within DVU0256at 293.892 kb on + strand, within DVU0256at 293.916 kb on + strand, within DVU0256at 293.924 kb on - strand, within DVU0256at 293.935 kb on + strand, within DVU0256at 293.973 kb on + strand, within DVU0256at 293.981 kb on - strand, within DVU0256at 293.983 kb on - strand, within DVU0256at 293.990 kb on + strand, within DVU0256at 293.991 kb on - strand, within DVU0256at 293.993 kb on - strand, within DVU0256at 293.998 kb on - strand, within DVU0256at 294.000 kb on + strand, within DVU0256at 294.018 kb on + strand, within DVU0256at 294.026 kb on - strand, within DVU0256at 294.026 kb on - strand, within DVU0256at 294.040 kb on + strand, within DVU0256at 294.048 kb on - strand, within DVU0256at 294.053 kb on - strandat 294.057 kb on + strandat 294.065 kb on - strandat 294.091 kb on + strandat 294.104 kb on + strandat 294.112 kb on - strandat 294.114 kb on + strandat 294.133 kb on + strandat 294.133 kb on + strandat 294.136 kb on + strandat 294.141 kb on - strandat 294.141 kb on - strandat 294.143 kb on - strandat 294.160 kb on + strandat 294.160 kb on - strandat 294.169 kb on + strandat 294.217 kb on + strandat 294.217 kb on + strandat 294.217 kb on + strandat 294.223 kb on - strandat 294.225 kb on - strandat 294.225 kb on - strandat 294.256 kb on + strandat 294.274 kb on + strandat 294.333 kb on + strandat 294.346 kb on - strandat 294.410 kb on + strandat 294.418 kb on - strandat 294.430 kb on + strandat 294.438 kb on - strandat 294.456 kb on + strandat 294.459 kb on - strandat 294.459 kb on - strandat 294.460 kb on - strandat 294.464 kb on - strandat 294.477 kb on - strandat 294.492 kb on - strandat 294.499 kb on - strandat 294.534 kb on + strandat 294.534 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N)
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290,082 + -1.1
290,082 + +0.1
290,090 - -0.7
290,090 - +1.0
290,261 + +2.3
290,365 - -1.1
290,406 + +1.0
290,414 - DVU0255 0.10 +0.1
290,493 - DVU0255 0.25 +0.2
290,564 - DVU0255 0.37 +1.0
290,599 - DVU0255 0.44 +0.2
290,601 - DVU0255 0.44 +0.8
290,623 - DVU0255 0.48 -0.3
290,650 - DVU0255 0.53 +0.2
290,669 + DVU0255 0.56 -0.8
290,677 - DVU0255 0.58 +0.4
290,677 - DVU0255 0.58 -0.1
290,689 + DVU0255 0.60 +0.2
290,693 - DVU0255 0.61 +0.6
290,697 - DVU0255 0.61 +0.3
290,701 + DVU0255 0.62 -0.1
290,701 + DVU0255 0.62 +1.5
290,709 - DVU0255 0.63 +0.7
290,709 - DVU0255 0.63 +2.4
290,713 + DVU0255 0.64 +0.3
290,731 + DVU0255 0.67 -0.5
290,769 + DVU0255 0.74 +0.0
290,777 + DVU0255 0.76 -0.2
290,777 - DVU0255 0.76 -1.5
290,808 + DVU0255 0.81 +0.3
290,808 + DVU0255 0.81 +1.0
290,808 - DVU0255 0.81 -0.2
290,840 - DVU0255 0.87 +1.4
290,871 + -0.3
290,905 + +0.3
291,069 + -0.2
291,079 + -1.8
291,104 + -0.7
291,116 + +0.2
291,149 + +0.3
291,174 + -0.8
291,182 - -3.8
291,224 + -0.9
291,242 + -0.4
291,255 - +0.3
291,304 - +0.2
291,305 + -0.3
291,314 + +2.1
291,337 - +0.3
291,354 + +0.8
291,362 - DVU0256 0.10 -0.3
291,365 + DVU0256 0.10 -0.1
291,365 + DVU0256 0.10 +0.7
291,395 - DVU0256 0.11 -0.1
291,465 + DVU0256 0.13 -0.5
291,473 - DVU0256 0.13 -1.9
291,492 - DVU0256 0.14 -0.9
291,523 + DVU0256 0.15 +0.3
291,558 + DVU0256 0.16 -0.5
291,558 + DVU0256 0.16 -0.4
291,561 - DVU0256 0.16 -0.6
291,574 + DVU0256 0.16 +1.4
291,577 + DVU0256 0.17 +0.2
291,590 - DVU0256 0.17 +0.2
291,639 - DVU0256 0.18 -0.1
291,676 + DVU0256 0.19 -0.1
291,681 + DVU0256 0.20 +0.7
291,713 + DVU0256 0.21 -0.4
291,731 - DVU0256 0.21 +1.1
291,839 - DVU0256 0.24 -0.2
291,854 + DVU0256 0.25 +1.3
291,886 - DVU0256 0.26 -0.5
291,892 - DVU0256 0.26 +0.7
292,127 - DVU0256 0.33 +0.6
292,145 - DVU0256 0.33 -0.2
292,162 + DVU0256 0.34 +2.0
292,254 + DVU0256 0.37 +0.2
292,262 - DVU0256 0.37 +0.9
292,262 - DVU0256 0.37 -0.7
292,303 + DVU0256 0.38 -0.8
292,305 + DVU0256 0.38 -0.3
292,349 + DVU0256 0.39 +0.7
292,362 - DVU0256 0.40 -0.5
292,364 + DVU0256 0.40 +0.5
292,405 + DVU0256 0.41 -3.1
292,437 - DVU0256 0.42 -0.1
292,452 - DVU0256 0.43 +0.9
292,452 - DVU0256 0.43 +0.6
292,461 + DVU0256 0.43 +0.6
292,469 - DVU0256 0.43 +0.9
292,469 - DVU0256 0.43 +0.4
292,485 - DVU0256 0.43 +1.0
292,512 - DVU0256 0.44 -0.3
292,571 + DVU0256 0.46 +0.3
292,615 + DVU0256 0.47 -0.3
292,661 - DVU0256 0.49 +0.1
292,701 - DVU0256 0.50 -5.1
292,756 + DVU0256 0.52 +0.7
292,761 + DVU0256 0.52 +2.3
292,764 - DVU0256 0.52 +0.2
292,767 + DVU0256 0.52 +0.1
292,769 - DVU0256 0.52 -0.4
292,769 - DVU0256 0.52 +1.2
292,788 + DVU0256 0.52 +0.1
292,789 - DVU0256 0.53 +0.5
292,829 + DVU0256 0.54 +2.3
292,900 + DVU0256 0.56 -1.2
292,916 + DVU0256 0.56 -0.1
292,938 + DVU0256 0.57 +0.8
292,967 - DVU0256 0.58 -0.5
293,004 + DVU0256 0.59 +0.0
293,004 + DVU0256 0.59 +0.5
293,004 + DVU0256 0.59 -0.2
293,012 - DVU0256 0.59 -0.3
293,012 - DVU0256 0.59 +0.4
293,111 + DVU0256 0.62 -0.2
293,188 + DVU0256 0.64 +0.7
293,231 + DVU0256 0.66 -0.1
293,239 - DVU0256 0.66 -0.1
293,277 - DVU0256 0.67 +0.0
293,277 - DVU0256 0.67 -2.1
293,295 - DVU0256 0.68 -0.8
293,318 - DVU0256 0.68 -1.3
293,333 - DVU0256 0.69 +0.5
293,356 - DVU0256 0.69 +0.2
293,421 - DVU0256 0.71 +0.6
293,486 + DVU0256 0.73 -0.5
293,492 - DVU0256 0.73 +2.7
293,498 + DVU0256 0.74 -0.2
293,521 + DVU0256 0.74 -0.2
293,731 + DVU0256 0.81 +0.5
293,783 - DVU0256 0.82 +0.1
293,800 + DVU0256 0.83 -0.2
293,840 + DVU0256 0.84 -0.7
293,855 + DVU0256 0.84 +0.0
293,863 - DVU0256 0.84 -1.1
293,863 - DVU0256 0.84 -0.7
293,863 - DVU0256 0.84 -0.6
293,884 - DVU0256 0.85 -0.0
293,892 + DVU0256 0.85 -1.3
293,916 + DVU0256 0.86 -0.7
293,924 - DVU0256 0.86 -0.4
293,935 + DVU0256 0.87 -0.2
293,973 + DVU0256 0.88 +0.1
293,981 - DVU0256 0.88 +0.1
293,983 - DVU0256 0.88 -0.5
293,990 + DVU0256 0.88 -1.1
293,991 - DVU0256 0.88 +2.3
293,993 - DVU0256 0.88 +1.0
293,998 - DVU0256 0.88 +1.1
294,000 + DVU0256 0.89 -1.5
294,018 + DVU0256 0.89 -0.0
294,026 - DVU0256 0.89 +0.2
294,026 - DVU0256 0.89 -0.3
294,040 + DVU0256 0.90 +0.3
294,048 - DVU0256 0.90 +2.9
294,053 - +0.0
294,057 + -0.6
294,065 - -0.3
294,091 + -0.3
294,104 + -0.7
294,112 - +0.1
294,114 + -0.2
294,133 + -1.4
294,133 + +0.0
294,136 + -0.0
294,141 - +0.2
294,141 - -2.5
294,143 - +0.3
294,160 + -0.5
294,160 - +0.3
294,169 + +0.4
294,217 + +0.7
294,217 + +1.1
294,217 + -0.4
294,223 - +0.8
294,225 - -1.0
294,225 - -0.4
294,256 + -0.1
294,274 + +2.3
294,333 + +0.7
294,346 - -0.1
294,410 + -0.2
294,418 - +1.1
294,430 + -0.7
294,438 - +1.3
294,456 + +0.2
294,459 - -0.4
294,459 - -0.3
294,460 - +0.5
294,464 - -2.4
294,477 - +1.0
294,492 - -0.5
294,499 - -1.8
294,534 + -2.5
294,534 + +0.6

Or see this region's nucleotide sequence