Experiment: MoLS4 with L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0136 and DVU0138 are separated by 229 nucleotides DVU0138 and cckA are separated by 305 nucleotides cckA and cheYI are separated by 107 nucleotides cheYI and DVU0141 are separated by 329 nucleotides
DVU0136: DVU0136 - hypothetical protein (TIGR), at 172,638 to 172,856
DVU0136
DVU0138: DVU0138 - response regulator (TIGR), at 173,086 to 173,466
DVU0138
DVU0139: cckA - sensor histidine kinase (TIGR), at 173,772 to 175,484
cckA
DVU0140: cheYI - response regulator (TIGR), at 175,592 to 176,005
cheYI
DVU0141: DVU0141 - peptidase, M50 family (TIGR), at 176,335 to 177,009
DVU0141
Position (kb) 173
174
175
176 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 172.785 kb on - strand, within DVU0136 at 172.808 kb on - strand, within DVU0136 at 172.811 kb on - strand, within DVU0136 at 172.841 kb on - strand at 172.848 kb on - strand at 172.848 kb on - strand at 172.930 kb on - strand at 172.932 kb on - strand at 172.958 kb on + strand at 173.006 kb on + strand at 173.006 kb on + strand at 173.044 kb on + strand at 173.054 kb on - strand at 173.137 kb on - strand, within DVU0138 at 173.149 kb on + strand, within DVU0138 at 173.253 kb on + strand, within DVU0138 at 173.258 kb on + strand, within DVU0138 at 173.335 kb on + strand, within DVU0138 at 173.379 kb on + strand, within DVU0138 at 173.379 kb on + strand, within DVU0138 at 173.387 kb on - strand, within DVU0138 at 173.387 kb on - strand, within DVU0138 at 173.417 kb on + strand, within DVU0138 at 173.452 kb on - strand at 173.478 kb on + strand at 173.483 kb on + strand at 173.486 kb on - strand at 173.501 kb on - strand at 173.503 kb on - strand at 173.542 kb on - strand at 173.589 kb on + strand at 173.628 kb on - strand at 173.673 kb on + strand at 173.681 kb on - strand at 173.721 kb on - strand at 173.727 kb on + strand at 173.737 kb on + strand at 173.769 kb on + strand at 173.785 kb on - strand at 173.814 kb on + strand at 173.814 kb on + strand at 173.814 kb on + strand at 173.814 kb on + strand at 173.822 kb on - strand at 173.886 kb on + strand at 173.988 kb on + strand, within cckA at 174.000 kb on + strand, within cckA at 174.035 kb on + strand, within cckA at 174.051 kb on - strand, within cckA at 174.070 kb on - strand, within cckA at 174.070 kb on - strand, within cckA at 174.186 kb on + strand, within cckA at 174.229 kb on - strand, within cckA at 174.271 kb on + strand, within cckA at 174.272 kb on + strand, within cckA at 174.280 kb on - strand, within cckA at 174.315 kb on + strand, within cckA at 174.315 kb on + strand, within cckA at 174.321 kb on + strand, within cckA at 174.323 kb on - strand, within cckA at 174.450 kb on - strand, within cckA at 174.463 kb on + strand, within cckA at 174.469 kb on - strand, within cckA at 174.523 kb on + strand, within cckA at 174.530 kb on + strand, within cckA at 174.530 kb on + strand, within cckA at 174.530 kb on + strand, within cckA at 174.530 kb on + strand, within cckA at 174.530 kb on + strand, within cckA at 174.538 kb on - strand, within cckA at 174.538 kb on - strand, within cckA at 174.538 kb on - strand, within cckA at 174.565 kb on + strand, within cckA at 174.600 kb on - strand, within cckA at 174.663 kb on - strand, within cckA at 174.735 kb on + strand, within cckA at 174.749 kb on + strand, within cckA at 174.757 kb on - strand, within cckA at 174.759 kb on - strand, within cckA at 174.850 kb on + strand, within cckA at 174.935 kb on + strand, within cckA at 174.966 kb on - strand, within cckA at 175.006 kb on + strand, within cckA at 175.020 kb on - strand, within cckA at 175.143 kb on + strand, within cckA at 175.147 kb on + strand, within cckA at 175.244 kb on - strand, within cckA at 175.265 kb on + strand, within cckA at 175.279 kb on - strand, within cckA at 175.403 kb on + strand at 175.410 kb on + strand at 175.410 kb on + strand at 175.418 kb on - strand at 175.444 kb on + strand at 175.444 kb on + strand at 175.444 kb on + strand at 175.444 kb on + strand at 175.447 kb on - strand at 175.452 kb on - strand at 175.523 kb on + strand at 175.600 kb on + strand at 175.663 kb on + strand, within cheYI at 175.667 kb on + strand, within cheYI at 175.668 kb on - strand, within cheYI at 175.742 kb on - strand, within cheYI at 175.765 kb on - strand, within cheYI at 175.814 kb on - strand, within cheYI at 175.820 kb on + strand, within cheYI at 175.858 kb on - strand, within cheYI at 175.896 kb on - strand, within cheYI at 176.031 kb on + strand at 176.048 kb on + strand at 176.072 kb on - strand at 176.142 kb on - strand at 176.168 kb on - strand at 176.180 kb on + strand at 176.225 kb on - strand at 176.256 kb on - strand at 176.256 kb on - strand at 176.266 kb on - strand at 176.280 kb on - strand at 176.285 kb on - strand at 176.297 kb on + strand at 176.297 kb on + strand at 176.335 kb on + strand at 176.351 kb on + strand at 176.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N) remove 172,785 - DVU0136 0.67 -0.5 172,808 - DVU0136 0.78 +0.1 172,811 - DVU0136 0.79 -0.9 172,841 - +0.7 172,848 - -0.3 172,848 - -0.1 172,930 - +0.0 172,932 - +0.6 172,958 + +0.0 173,006 + -0.5 173,006 + -0.4 173,044 + +2.9 173,054 - +0.5 173,137 - DVU0138 0.13 +0.3 173,149 + DVU0138 0.17 -1.1 173,253 + DVU0138 0.44 -0.2 173,258 + DVU0138 0.45 -0.3 173,335 + DVU0138 0.65 +0.2 173,379 + DVU0138 0.77 +0.3 173,379 + DVU0138 0.77 +1.4 173,387 - DVU0138 0.79 +1.0 173,387 - DVU0138 0.79 -0.5 173,417 + DVU0138 0.87 -0.9 173,452 - -1.0 173,478 + -0.3 173,483 + -0.5 173,486 - -0.4 173,501 - +0.3 173,503 - +0.6 173,542 - -0.5 173,589 + +1.6 173,628 - +0.8 173,673 + +2.0 173,681 - +0.7 173,721 - +0.8 173,727 + +1.0 173,737 + -0.4 173,769 + +0.1 173,785 - -0.2 173,814 + +1.3 173,814 + +2.3 173,814 + -0.1 173,814 + +0.8 173,822 - -1.2 173,886 + -2.0 173,988 + cckA DVU0139 0.13 -1.5 174,000 + cckA DVU0139 0.13 +0.4 174,035 + cckA DVU0139 0.15 +1.3 174,051 - cckA DVU0139 0.16 +1.2 174,070 - cckA DVU0139 0.17 -0.9 174,070 - cckA DVU0139 0.17 -0.6 174,186 + cckA DVU0139 0.24 -0.9 174,229 - cckA DVU0139 0.27 -0.1 174,271 + cckA DVU0139 0.29 -0.4 174,272 + cckA DVU0139 0.29 +0.5 174,280 - cckA DVU0139 0.30 -2.3 174,315 + cckA DVU0139 0.32 +0.1 174,315 + cckA DVU0139 0.32 +2.1 174,321 + cckA DVU0139 0.32 -1.1 174,323 - cckA DVU0139 0.32 +0.2 174,450 - cckA DVU0139 0.40 +0.3 174,463 + cckA DVU0139 0.40 +1.0 174,469 - cckA DVU0139 0.41 -0.2 174,523 + cckA DVU0139 0.44 -0.7 174,530 + cckA DVU0139 0.44 +0.4 174,530 + cckA DVU0139 0.44 +2.1 174,530 + cckA DVU0139 0.44 -0.9 174,530 + cckA DVU0139 0.44 +0.5 174,530 + cckA DVU0139 0.44 +0.7 174,538 - cckA DVU0139 0.45 +0.1 174,538 - cckA DVU0139 0.45 +0.4 174,538 - cckA DVU0139 0.45 +2.3 174,565 + cckA DVU0139 0.46 -0.4 174,600 - cckA DVU0139 0.48 -0.4 174,663 - cckA DVU0139 0.52 +0.0 174,735 + cckA DVU0139 0.56 -0.3 174,749 + cckA DVU0139 0.57 +1.0 174,757 - cckA DVU0139 0.58 -0.2 174,759 - cckA DVU0139 0.58 -0.3 174,850 + cckA DVU0139 0.63 +0.1 174,935 + cckA DVU0139 0.68 +1.2 174,966 - cckA DVU0139 0.70 +0.4 175,006 + cckA DVU0139 0.72 -0.2 175,020 - cckA DVU0139 0.73 -0.5 175,143 + cckA DVU0139 0.80 -0.2 175,147 + cckA DVU0139 0.80 -1.2 175,244 - cckA DVU0139 0.86 +1.8 175,265 + cckA DVU0139 0.87 -1.1 175,279 - cckA DVU0139 0.88 -1.1 175,403 + -0.3 175,410 + +0.2 175,410 + -1.5 175,418 - +1.2 175,444 + +1.1 175,444 + -1.0 175,444 + -1.9 175,444 + +0.1 175,447 - -0.4 175,452 - +0.6 175,523 + -0.1 175,600 + -0.1 175,663 + cheYI DVU0140 0.17 -0.0 175,667 + cheYI DVU0140 0.18 -0.1 175,668 - cheYI DVU0140 0.18 -0.7 175,742 - cheYI DVU0140 0.36 -0.3 175,765 - cheYI DVU0140 0.42 +0.7 175,814 - cheYI DVU0140 0.54 -2.2 175,820 + cheYI DVU0140 0.55 -0.1 175,858 - cheYI DVU0140 0.64 +1.2 175,896 - cheYI DVU0140 0.73 -1.8 176,031 + +0.3 176,048 + -0.5 176,072 - -0.9 176,142 - +0.2 176,168 - -0.7 176,180 + -2.6 176,225 - +0.2 176,256 - +0.3 176,256 - +0.6 176,266 - -0.2 176,280 - -0.7 176,285 - +0.4 176,297 + +0.6 176,297 + +0.7 176,335 + +2.5 176,351 + -0.2 176,361 + -2.3
Or see this region's nucleotide sequence