Experiment: MoLS4 with L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0051 and era are separated by 92 nucleotides era and DVU0053 are separated by 531 nucleotides
DVU0051: DVU0051 - conserved hypothetical protein TIGR00044 (TIGR), at 56,041 to 56,754
DVU0051
DVU0052: era - GTP-binding protein Era (TIGR), at 56,847 to 57,773
era
DVU0053: DVU0053 - sulfate permease, putative (TIGR), at 58,305 to 60,077
DVU0053
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 55.851 kb on - strand at 55.851 kb on - strand at 55.851 kb on - strand at 55.883 kb on + strand at 55.901 kb on - strand at 55.910 kb on - strand at 55.925 kb on - strand at 55.935 kb on + strand at 55.967 kb on - strand at 55.980 kb on + strand at 55.980 kb on + strand at 56.004 kb on + strand at 56.008 kb on + strand at 56.025 kb on - strand at 56.026 kb on - strand at 56.070 kb on + strand at 56.090 kb on - strand at 56.115 kb on + strand, within DVU0051 at 56.172 kb on + strand, within DVU0051 at 56.172 kb on + strand, within DVU0051 at 56.180 kb on - strand, within DVU0051 at 56.180 kb on - strand, within DVU0051 at 56.180 kb on - strand, within DVU0051 at 56.266 kb on - strand, within DVU0051 at 56.268 kb on + strand, within DVU0051 at 56.276 kb on - strand, within DVU0051 at 56.276 kb on - strand, within DVU0051 at 56.276 kb on - strand, within DVU0051 at 56.331 kb on - strand, within DVU0051 at 56.362 kb on - strand, within DVU0051 at 56.387 kb on - strand, within DVU0051 at 56.456 kb on + strand, within DVU0051 at 56.456 kb on + strand, within DVU0051 at 56.456 kb on + strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.494 kb on - strand, within DVU0051 at 56.508 kb on - strand, within DVU0051 at 56.523 kb on + strand, within DVU0051 at 56.576 kb on + strand, within DVU0051 at 56.631 kb on + strand, within DVU0051 at 56.665 kb on + strand, within DVU0051 at 56.713 kb on + strand at 56.845 kb on + strand at 56.864 kb on + strand at 56.872 kb on - strand at 56.872 kb on - strand at 56.899 kb on - strand at 56.899 kb on - strand at 56.899 kb on - strand at 57.817 kb on - strand at 57.846 kb on - strand at 57.934 kb on - strand at 57.971 kb on + strand at 57.979 kb on - strand at 58.010 kb on + strand at 58.056 kb on - strand at 58.062 kb on + strand at 58.070 kb on - strand at 58.070 kb on - strand at 58.072 kb on + strand at 58.080 kb on - strand at 58.081 kb on + strand at 58.089 kb on - strand at 58.116 kb on - strand at 58.137 kb on + strand at 58.166 kb on + strand at 58.174 kb on - strand at 58.178 kb on + strand at 58.185 kb on + strand at 58.193 kb on - strand at 58.193 kb on - strand at 58.225 kb on + strand at 58.243 kb on - strand at 58.279 kb on - strand at 58.333 kb on + strand at 58.336 kb on - strand at 58.345 kb on + strand at 58.345 kb on + strand at 58.353 kb on - strand at 58.381 kb on - strand at 58.400 kb on + strand at 58.400 kb on + strand at 58.400 kb on + strand at 58.400 kb on + strand at 58.402 kb on + strand at 58.408 kb on - strand at 58.433 kb on + strand at 58.441 kb on - strand at 58.504 kb on - strand, within DVU0053 at 58.512 kb on + strand, within DVU0053 at 58.571 kb on + strand, within DVU0053 at 58.571 kb on - strand, within DVU0053 at 58.573 kb on - strand, within DVU0053 at 58.588 kb on - strand, within DVU0053 at 58.611 kb on + strand, within DVU0053 at 58.611 kb on + strand, within DVU0053 at 58.619 kb on - strand, within DVU0053 at 58.619 kb on - strand, within DVU0053 at 58.662 kb on + strand, within DVU0053 at 58.683 kb on + strand, within DVU0053 at 58.707 kb on + strand, within DVU0053 at 58.729 kb on + strand, within DVU0053 at 58.739 kb on + strand, within DVU0053 at 58.747 kb on - strand, within DVU0053
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N) remove 55,851 - -0.4 55,851 - +0.3 55,851 - +0.4 55,883 + +2.3 55,901 - +2.7 55,910 - -1.0 55,925 - +3.9 55,935 + +0.1 55,967 - +0.3 55,980 + +0.0 55,980 + +0.6 56,004 + +0.8 56,008 + +0.6 56,025 - -0.7 56,026 - -0.4 56,070 + -1.4 56,090 - -0.8 56,115 + DVU0051 0.10 -1.0 56,172 + DVU0051 0.18 -0.6 56,172 + DVU0051 0.18 -0.7 56,180 - DVU0051 0.19 -1.2 56,180 - DVU0051 0.19 +0.7 56,180 - DVU0051 0.19 -0.7 56,266 - DVU0051 0.32 -1.2 56,268 + DVU0051 0.32 -1.6 56,276 - DVU0051 0.33 -0.9 56,276 - DVU0051 0.33 -1.9 56,276 - DVU0051 0.33 +0.7 56,331 - DVU0051 0.41 -1.3 56,362 - DVU0051 0.45 -0.6 56,387 - DVU0051 0.48 -0.9 56,456 + DVU0051 0.58 -1.3 56,456 + DVU0051 0.58 -0.6 56,456 + DVU0051 0.58 -1.3 56,464 - DVU0051 0.59 +1.3 56,464 - DVU0051 0.59 -1.9 56,464 - DVU0051 0.59 +0.2 56,464 - DVU0051 0.59 -1.6 56,464 - DVU0051 0.59 -2.5 56,464 - DVU0051 0.59 -1.6 56,464 - DVU0051 0.59 -1.8 56,464 - DVU0051 0.59 -0.4 56,494 - DVU0051 0.63 -1.7 56,508 - DVU0051 0.65 -0.5 56,523 + DVU0051 0.68 -1.5 56,576 + DVU0051 0.75 -0.7 56,631 + DVU0051 0.83 +0.3 56,665 + DVU0051 0.87 -1.2 56,713 + +0.3 56,845 + +0.1 56,864 + -1.4 56,872 - -0.5 56,872 - -0.9 56,899 - +1.7 56,899 - -0.3 56,899 - -0.1 57,817 - +0.5 57,846 - +0.2 57,934 - +0.5 57,971 + -0.2 57,979 - +0.7 58,010 + +1.1 58,056 - -3.1 58,062 + +0.4 58,070 - +1.0 58,070 - +1.1 58,072 + +2.5 58,080 - +0.3 58,081 + -1.3 58,089 - -1.8 58,116 - -0.9 58,137 + -1.4 58,166 + +0.2 58,174 - -0.0 58,178 + +0.0 58,185 + -0.0 58,193 - +0.3 58,193 - -0.3 58,225 + -0.6 58,243 - +1.0 58,279 - +1.0 58,333 + -0.2 58,336 - -0.4 58,345 + -3.1 58,345 + -0.1 58,353 - -0.1 58,381 - +0.0 58,400 + +0.1 58,400 + +0.0 58,400 + +1.0 58,400 + +1.8 58,402 + -0.2 58,408 - -0.3 58,433 + +0.8 58,441 - -3.2 58,504 - DVU0053 0.11 -2.3 58,512 + DVU0053 0.12 +0.4 58,571 + DVU0053 0.15 -0.1 58,571 - DVU0053 0.15 -0.7 58,573 - DVU0053 0.15 -0.0 58,588 - DVU0053 0.16 -1.6 58,611 + DVU0053 0.17 -0.3 58,611 + DVU0053 0.17 -0.7 58,619 - DVU0053 0.18 -1.1 58,619 - DVU0053 0.18 +0.9 58,662 + DVU0053 0.20 +0.5 58,683 + DVU0053 0.21 +0.2 58,707 + DVU0053 0.23 -0.2 58,729 + DVU0053 0.24 -0.2 58,739 + DVU0053 0.24 -0.2 58,747 - DVU0053 0.25 +0.3
Or see this region's nucleotide sequence