Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2516

Experiment: MoLS4 with L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2515 and DVU2516 are separated by 219 nucleotidesDVU2516 and DVU2517 are separated by 361 nucleotides DVU2515: DVU2515 - HD domain protein (TIGR), at 2,628,531 to 2,629,586 DVU2515 DVU2516: DVU2516 - CBS domain protein (TIGR), at 2,629,806 to 2,630,291 DVU2516 DVU2517: DVU2517 - conserved hypothetical protein (TIGR), at 2,630,653 to 2,631,894 DVU2517 Position (kb) 2629 2630 2631Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2629.076 kb on + strand, within DVU2515at 2629.197 kb on - strand, within DVU2515at 2629.252 kb on - strand, within DVU2515at 2629.255 kb on + strand, within DVU2515at 2629.312 kb on + strand, within DVU2515at 2629.331 kb on + strand, within DVU2515at 2629.339 kb on - strand, within DVU2515at 2629.339 kb on - strand, within DVU2515at 2629.435 kb on - strand, within DVU2515at 2629.489 kb on - strandat 2629.494 kb on - strandat 2629.505 kb on - strandat 2629.521 kb on + strandat 2629.596 kb on + strandat 2629.648 kb on + strandat 2629.661 kb on - strandat 2629.854 kb on + strandat 2629.862 kb on - strand, within DVU2516at 2629.897 kb on + strand, within DVU2516at 2629.974 kb on - strand, within DVU2516at 2630.045 kb on - strand, within DVU2516at 2630.059 kb on - strand, within DVU2516at 2630.128 kb on + strand, within DVU2516at 2630.128 kb on + strand, within DVU2516at 2630.128 kb on + strand, within DVU2516at 2630.128 kb on + strand, within DVU2516at 2630.128 kb on + strand, within DVU2516at 2630.136 kb on - strand, within DVU2516at 2630.136 kb on - strand, within DVU2516at 2630.136 kb on - strand, within DVU2516at 2630.195 kb on + strand, within DVU2516at 2630.212 kb on + strand, within DVU2516at 2630.220 kb on - strand, within DVU2516at 2630.240 kb on + strand, within DVU2516at 2630.248 kb on - strandat 2630.296 kb on - strandat 2630.296 kb on - strandat 2630.296 kb on - strandat 2630.312 kb on + strandat 2630.312 kb on + strandat 2630.329 kb on - strandat 2630.375 kb on - strandat 2630.381 kb on - strandat 2630.406 kb on + strandat 2630.406 kb on + strandat 2630.423 kb on + strandat 2630.423 kb on + strandat 2630.470 kb on - strandat 2630.494 kb on + strandat 2630.501 kb on + strandat 2630.504 kb on - strandat 2630.504 kb on - strandat 2630.509 kb on - strandat 2630.698 kb on - strandat 2630.769 kb on + strandat 2630.858 kb on + strand, within DVU2517at 2630.863 kb on + strand, within DVU2517at 2630.871 kb on - strand, within DVU2517at 2630.871 kb on - strand, within DVU2517at 2630.885 kb on + strand, within DVU2517at 2630.885 kb on + strand, within DVU2517at 2630.893 kb on - strand, within DVU2517at 2630.920 kb on + strand, within DVU2517at 2631.073 kb on + strand, within DVU2517at 2631.080 kb on + strand, within DVU2517at 2631.121 kb on + strand, within DVU2517at 2631.121 kb on + strand, within DVU2517at 2631.122 kb on - strand, within DVU2517at 2631.179 kb on - strand, within DVU2517at 2631.212 kb on + strand, within DVU2517at 2631.289 kb on - strand, within DVU2517

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N)
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2,629,076 + DVU2515 0.52 -1.4
2,629,197 - DVU2515 0.63 +0.3
2,629,252 - DVU2515 0.68 -3.5
2,629,255 + DVU2515 0.69 -1.7
2,629,312 + DVU2515 0.74 -0.8
2,629,331 + DVU2515 0.76 +1.3
2,629,339 - DVU2515 0.77 -1.1
2,629,339 - DVU2515 0.77 -2.9
2,629,435 - DVU2515 0.86 -2.1
2,629,489 - -3.4
2,629,494 - -2.8
2,629,505 - +1.2
2,629,521 + +1.6
2,629,596 + +0.0
2,629,648 + +0.3
2,629,661 - +0.2
2,629,854 + -0.3
2,629,862 - DVU2516 0.12 -0.7
2,629,897 + DVU2516 0.19 -1.1
2,629,974 - DVU2516 0.35 -2.3
2,630,045 - DVU2516 0.49 -0.9
2,630,059 - DVU2516 0.52 +0.4
2,630,128 + DVU2516 0.66 -1.4
2,630,128 + DVU2516 0.66 -1.2
2,630,128 + DVU2516 0.66 -0.6
2,630,128 + DVU2516 0.66 -0.5
2,630,128 + DVU2516 0.66 -0.3
2,630,136 - DVU2516 0.68 -1.3
2,630,136 - DVU2516 0.68 -0.2
2,630,136 - DVU2516 0.68 -1.0
2,630,195 + DVU2516 0.80 -0.9
2,630,212 + DVU2516 0.84 -0.8
2,630,220 - DVU2516 0.85 -1.2
2,630,240 + DVU2516 0.89 -0.7
2,630,248 - +0.4
2,630,296 - -1.1
2,630,296 - -0.5
2,630,296 - -1.6
2,630,312 + -0.9
2,630,312 + -0.7
2,630,329 - -0.3
2,630,375 - -2.8
2,630,381 - -0.1
2,630,406 + +0.1
2,630,406 + -0.4
2,630,423 + +0.7
2,630,423 + -0.1
2,630,470 - +0.1
2,630,494 + -0.3
2,630,501 + -0.7
2,630,504 - -0.5
2,630,504 - -0.5
2,630,509 - +0.8
2,630,698 - -0.1
2,630,769 + -0.1
2,630,858 + DVU2517 0.17 -1.2
2,630,863 + DVU2517 0.17 +0.1
2,630,871 - DVU2517 0.18 +2.4
2,630,871 - DVU2517 0.18 -1.4
2,630,885 + DVU2517 0.19 +0.6
2,630,885 + DVU2517 0.19 -0.4
2,630,893 - DVU2517 0.19 -1.3
2,630,920 + DVU2517 0.21 +0.8
2,631,073 + DVU2517 0.34 +0.8
2,631,080 + DVU2517 0.34 -0.6
2,631,121 + DVU2517 0.38 -1.6
2,631,121 + DVU2517 0.38 -0.7
2,631,122 - DVU2517 0.38 +0.3
2,631,179 - DVU2517 0.42 +0.5
2,631,212 + DVU2517 0.45 -0.6
2,631,289 - DVU2517 0.51 +0.9

Or see this region's nucleotide sequence