Experiment: MoLS4 with L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt proV and DVU2300 are separated by 135 nucleotides DVU2300 and DVU2301 are separated by 13 nucleotides DVU2301 and DVU2302 are separated by 11 nucleotides DVU2302 and DVU2303 are separated by 75 nucleotides
DVU2299: proV - glycine/betaine/L-proline ABC transporter, ATP binding protein (TIGR), at 2,392,994 to 2,394,187
proV
DVU2300: DVU2300 - hypothetical protein (TIGR), at 2,394,323 to 2,394,478
DVU2300
DVU2301: DVU2301 - lipoprotein, putative (TIGR), at 2,394,492 to 2,394,629
DVU2301
DVU2302: DVU2302 - glutathione-regulated potassium-efflux system protein KefB, putative (TIGR), at 2,394,641 to 2,396,659
DVU2302
DVU2303: DVU2303 - conserved domain protein (TIGR), at 2,396,735 to 2,398,162
DVU2303
Position (kb)
2394
2395
2396
2397 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2393.688 kb on + strand, within proV at 2393.696 kb on - strand, within proV at 2393.731 kb on + strand, within proV at 2393.739 kb on - strand, within proV at 2393.747 kb on - strand, within proV at 2393.793 kb on - strand, within proV at 2393.816 kb on + strand, within proV at 2393.816 kb on + strand, within proV at 2393.821 kb on + strand, within proV at 2393.824 kb on - strand, within proV at 2393.826 kb on + strand, within proV at 2393.830 kb on + strand, within proV at 2393.878 kb on + strand, within proV at 2394.201 kb on - strand at 2394.213 kb on + strand at 2394.221 kb on - strand at 2394.257 kb on - strand at 2394.294 kb on + strand at 2394.342 kb on + strand, within DVU2300 at 2394.618 kb on - strand at 2394.618 kb on - strand at 2394.693 kb on - strand at 2394.714 kb on + strand at 2394.794 kb on + strand at 2394.810 kb on - strand at 2394.838 kb on - strand at 2394.857 kb on + strand, within DVU2302 at 2394.860 kb on - strand, within DVU2302 at 2394.886 kb on + strand, within DVU2302 at 2394.914 kb on + strand, within DVU2302 at 2394.917 kb on - strand, within DVU2302 at 2394.923 kb on + strand, within DVU2302 at 2394.984 kb on - strand, within DVU2302 at 2395.028 kb on + strand, within DVU2302 at 2395.106 kb on - strand, within DVU2302 at 2395.208 kb on + strand, within DVU2302 at 2395.289 kb on - strand, within DVU2302 at 2395.333 kb on + strand, within DVU2302 at 2395.336 kb on - strand, within DVU2302 at 2395.357 kb on - strand, within DVU2302 at 2395.368 kb on + strand, within DVU2302 at 2395.418 kb on - strand, within DVU2302 at 2395.418 kb on - strand, within DVU2302 at 2395.427 kb on + strand, within DVU2302 at 2395.513 kb on + strand, within DVU2302 at 2395.520 kb on + strand, within DVU2302 at 2395.742 kb on + strand, within DVU2302 at 2395.749 kb on + strand, within DVU2302 at 2395.749 kb on + strand, within DVU2302 at 2395.749 kb on + strand, within DVU2302 at 2395.749 kb on + strand, within DVU2302 at 2395.751 kb on - strand, within DVU2302 at 2395.757 kb on - strand, within DVU2302 at 2395.757 kb on - strand, within DVU2302 at 2395.757 kb on - strand, within DVU2302 at 2395.757 kb on - strand, within DVU2302 at 2395.801 kb on + strand, within DVU2302 at 2395.809 kb on - strand, within DVU2302 at 2395.837 kb on - strand, within DVU2302 at 2395.844 kb on - strand, within DVU2302 at 2395.844 kb on - strand, within DVU2302 at 2395.844 kb on - strand, within DVU2302 at 2395.872 kb on - strand, within DVU2302 at 2395.877 kb on - strand, within DVU2302 at 2395.889 kb on + strand, within DVU2302 at 2395.889 kb on + strand, within DVU2302 at 2395.897 kb on - strand, within DVU2302 at 2395.897 kb on - strand, within DVU2302 at 2395.929 kb on - strand, within DVU2302 at 2395.979 kb on - strand, within DVU2302 at 2396.078 kb on - strand, within DVU2302 at 2396.117 kb on + strand, within DVU2302 at 2396.132 kb on + strand, within DVU2302 at 2396.230 kb on - strand, within DVU2302 at 2396.295 kb on - strand, within DVU2302 at 2396.351 kb on + strand, within DVU2302 at 2396.359 kb on - strand, within DVU2302 at 2396.365 kb on + strand, within DVU2302 at 2396.386 kb on - strand, within DVU2302 at 2396.391 kb on - strand, within DVU2302 at 2396.428 kb on + strand, within DVU2302 at 2396.436 kb on - strand, within DVU2302 at 2396.548 kb on - strand at 2396.633 kb on - strand at 2396.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N) remove 2,393,688 + proV DVU2299 0.58 +0.0 2,393,696 - proV DVU2299 0.59 +0.6 2,393,731 + proV DVU2299 0.62 -0.3 2,393,739 - proV DVU2299 0.62 +0.8 2,393,747 - proV DVU2299 0.63 +1.2 2,393,793 - proV DVU2299 0.67 -0.9 2,393,816 + proV DVU2299 0.69 -0.8 2,393,816 + proV DVU2299 0.69 +0.8 2,393,821 + proV DVU2299 0.69 -0.1 2,393,824 - proV DVU2299 0.70 +1.7 2,393,826 + proV DVU2299 0.70 +1.8 2,393,830 + proV DVU2299 0.70 +0.2 2,393,878 + proV DVU2299 0.74 -0.9 2,394,201 - +0.1 2,394,213 + -0.5 2,394,221 - +0.4 2,394,257 - +1.4 2,394,294 + +1.4 2,394,342 + DVU2300 0.12 -0.7 2,394,618 - -1.2 2,394,618 - +0.0 2,394,693 - +1.4 2,394,714 + -0.5 2,394,794 + -0.1 2,394,810 - +0.8 2,394,838 - -1.3 2,394,857 + DVU2302 0.11 +0.5 2,394,860 - DVU2302 0.11 -0.3 2,394,886 + DVU2302 0.12 +0.3 2,394,914 + DVU2302 0.14 -0.1 2,394,917 - DVU2302 0.14 -2.4 2,394,923 + DVU2302 0.14 -0.7 2,394,984 - DVU2302 0.17 -0.0 2,395,028 + DVU2302 0.19 -0.5 2,395,106 - DVU2302 0.23 +0.7 2,395,208 + DVU2302 0.28 -0.2 2,395,289 - DVU2302 0.32 +0.1 2,395,333 + DVU2302 0.34 -0.7 2,395,336 - DVU2302 0.34 +0.3 2,395,357 - DVU2302 0.35 -0.1 2,395,368 + DVU2302 0.36 +0.2 2,395,418 - DVU2302 0.38 +0.2 2,395,418 - DVU2302 0.38 -0.4 2,395,427 + DVU2302 0.39 -0.1 2,395,513 + DVU2302 0.43 -0.0 2,395,520 + DVU2302 0.44 +0.4 2,395,742 + DVU2302 0.55 -0.2 2,395,749 + DVU2302 0.55 -1.1 2,395,749 + DVU2302 0.55 -0.5 2,395,749 + DVU2302 0.55 -0.2 2,395,749 + DVU2302 0.55 +0.8 2,395,751 - DVU2302 0.55 -1.3 2,395,757 - DVU2302 0.55 +2.1 2,395,757 - DVU2302 0.55 -0.6 2,395,757 - DVU2302 0.55 +0.0 2,395,757 - DVU2302 0.55 -1.8 2,395,801 + DVU2302 0.57 -0.2 2,395,809 - DVU2302 0.58 -0.1 2,395,837 - DVU2302 0.59 -0.6 2,395,844 - DVU2302 0.60 -0.4 2,395,844 - DVU2302 0.60 -0.3 2,395,844 - DVU2302 0.60 -0.2 2,395,872 - DVU2302 0.61 +0.6 2,395,877 - DVU2302 0.61 +0.1 2,395,889 + DVU2302 0.62 -0.5 2,395,889 + DVU2302 0.62 -0.8 2,395,897 - DVU2302 0.62 -1.0 2,395,897 - DVU2302 0.62 -0.3 2,395,929 - DVU2302 0.64 +0.7 2,395,979 - DVU2302 0.66 -1.8 2,396,078 - DVU2302 0.71 -0.9 2,396,117 + DVU2302 0.73 -0.7 2,396,132 + DVU2302 0.74 +0.9 2,396,230 - DVU2302 0.79 +0.3 2,396,295 - DVU2302 0.82 -1.3 2,396,351 + DVU2302 0.85 -0.0 2,396,359 - DVU2302 0.85 +0.2 2,396,365 + DVU2302 0.85 -0.7 2,396,386 - DVU2302 0.86 +0.1 2,396,391 - DVU2302 0.87 -2.0 2,396,428 + DVU2302 0.89 +1.2 2,396,436 - DVU2302 0.89 +0.4 2,396,548 - -0.0 2,396,633 - +0.2 2,396,851 + -0.1
Or see this region's nucleotide sequence