Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0946

Experiment: MoLS4 with L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0945 and DVU0946 are separated by 2 nucleotidesDVU0946 and DVU0947 are separated by 55 nucleotides DVU0945: DVU0945 - sensor histidine kinase (TIGR), at 1,037,557 to 1,039,989 DVU0945 DVU0946: DVU0946 - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 1,039,992 to 1,041,422 DVU0946 DVU0947: DVU0947 - membrane protein, putative (TIGR), at 1,041,478 to 1,042,383 DVU0947 Position (kb) 1039 1040 1041 1042Strain fitness (log2 ratio) -2 -1 0 1 2at 1039.112 kb on - strand, within DVU0945at 1039.157 kb on - strand, within DVU0945at 1039.187 kb on - strand, within DVU0945at 1039.189 kb on + strand, within DVU0945at 1039.202 kb on - strand, within DVU0945at 1039.361 kb on + strand, within DVU0945at 1039.366 kb on + strand, within DVU0945at 1039.376 kb on + strand, within DVU0945at 1039.507 kb on - strand, within DVU0945at 1039.707 kb on + strand, within DVU0945at 1039.712 kb on + strand, within DVU0945at 1039.740 kb on - strand, within DVU0945at 1039.766 kb on - strandat 1039.781 kb on + strandat 1039.820 kb on - strandat 1039.827 kb on + strandat 1039.845 kb on - strandat 1039.863 kb on - strandat 1039.912 kb on - strandat 1040.049 kb on - strandat 1040.129 kb on - strandat 1040.185 kb on + strand, within DVU0946at 1040.360 kb on - strand, within DVU0946at 1040.656 kb on - strand, within DVU0946at 1040.656 kb on - strand, within DVU0946at 1040.660 kb on + strand, within DVU0946at 1040.785 kb on + strand, within DVU0946at 1041.023 kb on + strand, within DVU0946at 1041.151 kb on + strand, within DVU0946at 1041.324 kb on - strandat 1041.473 kb on + strandat 1041.625 kb on - strand, within DVU0947at 1041.665 kb on + strand, within DVU0947at 1041.704 kb on + strand, within DVU0947at 1041.714 kb on - strand, within DVU0947at 1041.714 kb on - strand, within DVU0947at 1041.716 kb on + strand, within DVU0947at 1041.734 kb on - strand, within DVU0947at 1041.772 kb on - strand, within DVU0947at 1041.863 kb on + strand, within DVU0947at 1041.869 kb on - strand, within DVU0947at 1041.972 kb on - strand, within DVU0947at 1042.006 kb on + strand, within DVU0947at 1042.011 kb on + strand, within DVU0947at 1042.272 kb on - strand, within DVU0947at 1042.286 kb on + strand, within DVU0947at 1042.296 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N)
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1,039,112 - DVU0945 0.64 -0.2
1,039,157 - DVU0945 0.66 -0.3
1,039,187 - DVU0945 0.67 -0.0
1,039,189 + DVU0945 0.67 -1.4
1,039,202 - DVU0945 0.68 +0.3
1,039,361 + DVU0945 0.74 +0.1
1,039,366 + DVU0945 0.74 +0.5
1,039,376 + DVU0945 0.75 -0.5
1,039,507 - DVU0945 0.80 -0.9
1,039,707 + DVU0945 0.88 +0.7
1,039,712 + DVU0945 0.89 +1.5
1,039,740 - DVU0945 0.90 -1.3
1,039,766 - +0.2
1,039,781 + +1.4
1,039,820 - -0.2
1,039,827 + -0.3
1,039,845 - -0.6
1,039,863 - +2.4
1,039,912 - -0.1
1,040,049 - -0.2
1,040,129 - -0.3
1,040,185 + DVU0946 0.13 +0.2
1,040,360 - DVU0946 0.26 -1.0
1,040,656 - DVU0946 0.46 -1.5
1,040,656 - DVU0946 0.46 +0.2
1,040,660 + DVU0946 0.47 -0.5
1,040,785 + DVU0946 0.55 -0.3
1,041,023 + DVU0946 0.72 -0.9
1,041,151 + DVU0946 0.81 +1.6
1,041,324 - -1.1
1,041,473 + -0.2
1,041,625 - DVU0947 0.16 +0.6
1,041,665 + DVU0947 0.21 +0.1
1,041,704 + DVU0947 0.25 -0.3
1,041,714 - DVU0947 0.26 +0.4
1,041,714 - DVU0947 0.26 +0.1
1,041,716 + DVU0947 0.26 -2.0
1,041,734 - DVU0947 0.28 +1.2
1,041,772 - DVU0947 0.32 +0.4
1,041,863 + DVU0947 0.42 +0.2
1,041,869 - DVU0947 0.43 +0.0
1,041,972 - DVU0947 0.55 +0.0
1,042,006 + DVU0947 0.58 -1.5
1,042,011 + DVU0947 0.59 +0.0
1,042,272 - DVU0947 0.88 +0.2
1,042,286 + DVU0947 0.89 +1.3
1,042,296 - -0.9

Or see this region's nucleotide sequence