Experiment: Succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3318 and Rru_A3319 are separated by 149 nucleotides Rru_A3319 and Rru_A3320 are separated by 115 nucleotides Rru_A3320 and Rru_A3321 are separated by 19 nucleotides
Rru_A3318: Rru_A3318 - Gamma-glutamyltransferase (NCBI), at 3,827,625 to 3,829,229
_A3318
Rru_A3319: Rru_A3319 - Xanthine-guanine phosphoribosyltransferase (NCBI), at 3,829,379 to 3,829,936
_A3319
Rru_A3320: Rru_A3320 - Cytidyltransferase-related (NCBI), at 3,830,052 to 3,830,924
_A3320
Rru_A3321: Rru_A3321 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI), at 3,830,944 to 3,831,780
_A3321
Position (kb)
3830
3831 Strain fitness (log2 ratio)
-2
-1
0
1 at 3829.079 kb on + strand at 3829.079 kb on + strand at 3829.079 kb on + strand at 3829.080 kb on - strand at 3829.087 kb on + strand at 3829.087 kb on + strand at 3829.269 kb on + strand at 3829.269 kb on + strand at 3829.269 kb on + strand at 3829.270 kb on - strand at 3829.271 kb on + strand at 3829.272 kb on - strand at 3829.272 kb on - strand at 3829.329 kb on + strand at 3829.366 kb on + strand at 3829.366 kb on + strand at 3831.904 kb on + strand at 3831.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C) remove 3,829,079 + -0.2 3,829,079 + +0.8 3,829,079 + -0.5 3,829,080 - -0.8 3,829,087 + -0.6 3,829,087 + -1.0 3,829,269 + +0.2 3,829,269 + -1.2 3,829,269 + +0.9 3,829,270 - +0.2 3,829,271 + +0.7 3,829,272 - +0.3 3,829,272 - -0.2 3,829,329 + -0.3 3,829,366 + -0.9 3,829,366 + -2.2 3,831,904 + -0.6 3,831,904 + +0.9
Or see this region's nucleotide sequence