Experiment: Succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2591 and Rru_A2592 are separated by 251 nucleotides Rru_A2592 and Rru_A2593 overlap by 25 nucleotides
Rru_A2591: Rru_A2591 - hypothetical protein (NCBI), at 3,011,509 to 3,012,225
_A2591
Rru_A2592: Rru_A2592 - hypothetical protein (NCBI), at 3,012,477 to 3,013,172
_A2592
Rru_A2593: Rru_A2593 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 3,013,148 to 3,014,857
_A2593
Position (kb)
3012
3013
3014 Strain fitness (log2 ratio)
-1
0
1 at 3011.733 kb on + strand, within Rru_A2591 at 3011.733 kb on + strand, within Rru_A2591 at 3011.733 kb on + strand, within Rru_A2591 at 3011.733 kb on + strand, within Rru_A2591 at 3011.734 kb on - strand, within Rru_A2591 at 3011.734 kb on - strand, within Rru_A2591 at 3011.810 kb on + strand, within Rru_A2591 at 3011.810 kb on + strand, within Rru_A2591 at 3011.810 kb on + strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.972 kb on + strand, within Rru_A2591 at 3011.972 kb on + strand, within Rru_A2591 at 3011.973 kb on - strand, within Rru_A2591 at 3011.973 kb on - strand, within Rru_A2591 at 3013.066 kb on + strand, within Rru_A2592 at 3013.066 kb on + strand, within Rru_A2592 at 3013.067 kb on - strand, within Rru_A2592 at 3013.067 kb on - strand, within Rru_A2592 at 3013.212 kb on + strand at 3013.212 kb on + strand at 3013.213 kb on - strand at 3013.213 kb on - strand at 3013.213 kb on - strand at 3013.213 kb on - strand at 3013.213 kb on - strand at 3013.213 kb on - strand at 3013.247 kb on - strand at 3013.247 kb on - strand at 3013.575 kb on + strand, within Rru_A2593 at 3013.701 kb on + strand, within Rru_A2593 at 3013.701 kb on + strand, within Rru_A2593 at 3013.702 kb on - strand, within Rru_A2593 at 3013.971 kb on + strand, within Rru_A2593 at 3014.163 kb on - strand, within Rru_A2593 at 3014.169 kb on - strand, within Rru_A2593
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C) remove 3,011,733 + Rru_A2591 0.31 -0.6 3,011,733 + Rru_A2591 0.31 -0.4 3,011,733 + Rru_A2591 0.31 +0.2 3,011,733 + Rru_A2591 0.31 -0.8 3,011,734 - Rru_A2591 0.31 -0.6 3,011,734 - Rru_A2591 0.31 -0.5 3,011,810 + Rru_A2591 0.42 +0.1 3,011,810 + Rru_A2591 0.42 -0.1 3,011,810 + Rru_A2591 0.42 -0.5 3,011,811 - Rru_A2591 0.42 -1.4 3,011,811 - Rru_A2591 0.42 -0.7 3,011,811 - Rru_A2591 0.42 +1.1 3,011,811 - Rru_A2591 0.42 -0.2 3,011,811 - Rru_A2591 0.42 +0.0 3,011,811 - Rru_A2591 0.42 -0.7 3,011,811 - Rru_A2591 0.42 -0.9 3,011,811 - Rru_A2591 0.42 -0.4 3,011,972 + Rru_A2591 0.65 +0.2 3,011,972 + Rru_A2591 0.65 -0.3 3,011,973 - Rru_A2591 0.65 -0.8 3,011,973 - Rru_A2591 0.65 -0.5 3,013,066 + Rru_A2592 0.85 +0.3 3,013,066 + Rru_A2592 0.85 +0.8 3,013,067 - Rru_A2592 0.85 +0.3 3,013,067 - Rru_A2592 0.85 +0.2 3,013,212 + -0.3 3,013,212 + -0.9 3,013,213 - +1.4 3,013,213 - -0.9 3,013,213 - +0.0 3,013,213 - +0.6 3,013,213 - +0.2 3,013,213 - -0.1 3,013,247 - -0.5 3,013,247 - +0.6 3,013,575 + Rru_A2593 0.25 -0.2 3,013,701 + Rru_A2593 0.32 +0.6 3,013,701 + Rru_A2593 0.32 -0.1 3,013,702 - Rru_A2593 0.32 +0.4 3,013,971 + Rru_A2593 0.48 -0.2 3,014,163 - Rru_A2593 0.59 -0.3 3,014,169 - Rru_A2593 0.60 -0.8
Or see this region's nucleotide sequence